BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0002.p
         (94 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport tran...   152   6e-39
gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport tran...    74   2e-15
gi|300313118|ref|YP_003777210.1| proton glutamate symport protei...    55   1e-09

>gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  152 bits (384), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/90 (84%), Positives = 82/90 (91%)

Query: 5   SGFIVLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSNELDEK 64
           SGFIVLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWS ELD +
Sbjct: 352 SGFIVLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSE 411

Query: 65  RLHAQLNNETAEEANEPEAVLDRTEAKIHH 94
           RL   LNNET E+A  PE++LDRT+AK+HH
Sbjct: 412 RLTKVLNNETVEDAQAPESILDRTDAKMHH 441


>gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 54/85 (63%)

Query: 2   IPFSGFIVLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSNEL 61
           +P S  ++LAATL+ +  +PV GL L+L ID F+  ARAL N +GN VAT+V+A W  ++
Sbjct: 349 VPGSAIVILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWERDI 408

Query: 62  DEKRLHAQLNNETAEEANEPEAVLD 86
           D+ R  A LN E+     E   V++
Sbjct: 409 DKVRARAVLNGESVAPLVEENPVIE 433


>gi|300313118|ref|YP_003777210.1| proton glutamate symport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 2   IPFSGFIVLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSNEL 61
           +P +  +V+AATL    ++P AGL +ILGID F+   R+ TN +GN +A+ VVAKW   L
Sbjct: 348 VPRASLVVIAATLHQF-NIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGL 406

Query: 62  DEKRLHAQLNNETAEEANEPEAVLDRTEAKIH 93
             +   A+   E  +EA          EAK+H
Sbjct: 407 MTEEEAARAEVEIEQEA----------EAKLH 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 237,585
Number of extensions: 7395
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 94
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 31
Effective length of database: 1,321,565
Effective search space: 40968515
Effective search space used: 40968515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)