BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0186.0029.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312558|ref|YP_003776650.1| transmembrane protein [Herbaspi...   416   e-117

>gi|300312558|ref|YP_003776650.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 432

 Score =  416 bits (1068), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/239 (86%), Positives = 229/239 (95%)

Query: 1   MAYIIFVNPSILGDAGMPKDSVFVATCVAAAIGTLIMGLYANYPIGLAPGMGLNAYFAYA 60
           MAYIIFVNPSILGDAGMPKD+VFVATC+AAA+GTLIMGLYANYPIGLAPGMGLNAYFAYA
Sbjct: 31  MAYIIFVNPSILGDAGMPKDAVFVATCIAAAVGTLIMGLYANYPIGLAPGMGLNAYFAYA 90

Query: 61  VVKGMGFPWQAALGAVFISGCLFLLVSLFRIRELIINAIPHSLRTAIPAGIGLFLALISL 120
           VVKGMGFPWQAALGAV ISGCLFLLVS+ R+RELII++IP SLRTAIPAGIGLFL +ISL
Sbjct: 91  VVKGMGFPWQAALGAVLISGCLFLLVSVLRVRELIISSIPRSLRTAIPAGIGLFLGIISL 150

Query: 121 KNSGIVAASPATFVTMGDLHQVAPVLAIIGFLVIVALDQLKIRGALLIGILSVTVLSFIF 180
           K++GI+AA+PATFVT+GDLHQ   V+AIIGFLVIVALD+LK+RGALLIGIL VTVLSF+F
Sbjct: 151 KSAGIIAANPATFVTLGDLHQPPAVMAIIGFLVIVALDRLKVRGALLIGILLVTVLSFVF 210

Query: 181 GGNHFNGVFSAPPSISPTLFQLDLKGAISMGLLNVVLVFFLVELFDATGTLMGVAQRAG 239
           GGNHF+G+F+APPSI+PTL QLD+KGA+SMGLLNVVLVFFLVELFDATGTLMGVA RAG
Sbjct: 211 GGNHFSGIFAAPPSIAPTLLQLDIKGALSMGLLNVVLVFFLVELFDATGTLMGVATRAG 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.145    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,044,744
Number of extensions: 45929
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)