BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0186.0027.p (138 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312334|ref|YP_003776426.1| transcription regulator protein... 165 2e-42 gi|300313017|ref|YP_003777109.1| LysR family transcription regul... 98 3e-22 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 94 5e-21 gi|300313065|ref|YP_003777157.1| LysR family transcription regul... 87 3e-19 gi|300310802|ref|YP_003774894.1| LysR family transcription regul... 82 1e-17 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 165 bits (417), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 70/137 (51%), Positives = 99/137 (72%), Gaps = 1/137 (0%) Query: 1 VCAAPEYLHRNGIPKTLDDLAQHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDG 60 + AAP YL R+G P++ D+L +HNCLA + +G QRGW +Q+GK + + GN+ CNDG Sbjct: 165 IVAAPAYLRRHGTPQSPDELMRHNCLAMSSEG-SQRGWTLRQSGKVSVYKVGGNMVCNDG 223 Query: 61 ELLHRWASEGLGLAWRSTWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTRF 120 E+LH WA G GLAWRS WE+ + + +GEL+TVLD++A P I AV+ Q+RHLP + R Sbjct: 224 EVLHNWALAGRGLAWRSMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRA 283 Query: 121 FIDYLKEVYSQPDYWTR 137 F+D+L+ Y+QPDYW + Sbjct: 284 FVDFLRHAYAQPDYWKK 300 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 97.8 bits (242), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 3/140 (2%) Query: 1 VCAAPEYLHRNGIPKTLDDLAQHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDG 60 + AAP YL G P+TLDDLAQH+ L ++ R ++G + + + NDG Sbjct: 166 LAAAPGYLAARGTPRTLDDLAQHDLLVYSHAKEPNRLHLSGRDGSQRTLEIKSLMQSNDG 225 Query: 61 ELLHRWASEGLGLAWRSTWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTRF 120 +++ A EGLG+ + + I + +G L+ VLDE+ LP I Y ++HLPA+ R Sbjct: 226 QIIRAAALEGLGILIQPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRV 285 Query: 121 FIDYLKEVYSQPDY---WTR 137 FID+L + + + DY WTR Sbjct: 286 FIDFLVQHFEEMDYERKWTR 305 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 93.6 bits (231), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 1/131 (0%) Query: 1 VCAAPEYLHRNGIPKTLDDLAQHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDG 60 VCA+P YL +G P +LAQH ++++ + W F PV +R L N+G Sbjct: 165 VCASPAYLDAHGTPAHPHELAQHQTISYSYNQSKDE-WQFNGPEGPVSVRVSSRLHVNNG 223 Query: 61 ELLHRWASEGLGLAWRSTWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTRF 120 + + A G+G+ + T+ I L SG+L+++L +Y P I AVYP + HLPAK R Sbjct: 224 DSCVQAALGGIGITRQPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRA 283 Query: 121 FIDYLKEVYSQ 131 +D+L E ++Q Sbjct: 284 MLDFLTEAFAQ 294 >gi|300313065|ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 87.4 bits (215), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 63/97 (64%) Query: 1 VCAAPEYLHRNGIPKTLDDLAQHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDG 60 +CA+P+YL R+G P++ DL QHNCL + L W F ++ +PV ++ G+ C+DG Sbjct: 166 LCASPDYLARHGRPRSPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDG 225 Query: 61 ELLHRWASEGLGLAWRSTWEIQSQLASGELITVLDEY 97 EL+ RWA G G+A++S ++ + L +G L +L++Y Sbjct: 226 ELVRRWAVNGRGIAYKSRLDVLADLRNGRLEALLEDY 262 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 82.4 bits (202), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 3/128 (2%) Query: 1 VCAAPEYLHRNGIPKTLDDLAQHNCLAFNLQGGQQRGWYFQQNGKPV-IIRAQGNLDCND 59 +CA+P YL ++G+P L L QH CL + Q G + K V ++ G L N Sbjct: 168 LCASPAYLKKHGLPADLAALRQHQCLVIR-ERNQSFGIWRMMGPKGVETVKVSGMLASNH 226 Query: 60 GELLHRWASEGLGLAWRSTWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTR 119 GE++H+WA +G G+ RS W++ L G L+ VL +Y D+ AVYP Q AK R Sbjct: 227 GEIIHQWAVDGHGIILRSAWDVADSLKRGRLVRVLPQY-YQEADLCAVYPLQLKNSAKVR 285 Query: 120 FFIDYLKE 127 + +L++ Sbjct: 286 ECVRFLQK 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 512,381 Number of extensions: 21480 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 19 Length of query: 138 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 62 Effective length of database: 1,260,010 Effective search space: 78120620 Effective search space used: 78120620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)