BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0186.0025.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313515|ref|YP_003777607.1| hydroxypyruvate isomerase [Herb...   236   1e-63

>gi|300313515|ref|YP_003777607.1| hydroxypyruvate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  236 bits (603), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/255 (44%), Positives = 161/255 (63%), Gaps = 2/255 (0%)

Query: 1   MTKLAANLTMLFTELPFIERFRAAAQANFKAVEFLFPYAFEPAQIAEQLRKNELELVLHN 60
           M + AANL+M++ E  F++RF AAA+  F  VEFLFPY + P +I  +L  N L   L N
Sbjct: 1   MLRFAANLSMMYVEHDFLDRFAAAAKDGFSGVEFLFPYDYAPEEIKSRLEANGLTQALFN 60

Query: 61  LXGGEGNWEAGERGIACHPDRVGEFRQGVDEAIRYAKVLGVRQLNCLVGIQPPGISAAAA 120
                G+W AGERGIA  P R  EF++ ++ A++YA V+G + L+ + G+  PG   A  
Sbjct: 61  --APPGDWAAGERGIASLPGRQDEFKRSIETALKYAAVIGNQTLHVMAGLIKPGQDRAQH 118

Query: 121 RETLVANLKFAADKLQAEGIALLIEPINYFDIPGFFLNTTKQAAELIASTGSNNLFVQYD 180
           R   + NL +AA + ++ G+ ++IEPIN  +IPGFFLN    A  + A  G+ NL VQ+D
Sbjct: 119 RAVYLDNLSYAAHQAESAGLTVVIEPINTRNIPGFFLNRQDDAQAICAEVGAPNLKVQFD 178

Query: 181 IYHMQRMEGELANTIKANLSLIRHVQLADNPGRFEPGTGEINYRFLFRYLDEIGYQGWIG 240
            YH Q +EG++A  +K ++  I H+Q+A  P R EP  GE+NY +L + +D +GYQGWIG
Sbjct: 179 CYHCQIVEGDVAVKLKRDMPGIGHIQIAGVPERHEPDVGELNYPYLLKLIDTLGYQGWIG 238

Query: 241 CEYKPKAGTVEGLGW 255
           CEY P   T  GLGW
Sbjct: 239 CEYNPAGATSAGLGW 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 829,068
Number of extensions: 34777
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)