BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0186.0020.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314076|ref|YP_003778168.1| LysR family transcription regul...   182   2e-47
gi|300309384|ref|YP_003773476.1| transcription regulator protein...    60   2e-10

>gi|300314076|ref|YP_003778168.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  182 bits (463), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/249 (36%), Positives = 151/249 (60%), Gaps = 4/249 (1%)

Query: 1   VTLFERTSSGMTITKPGELLLEHARKTLSNAVDLVNTA---RKMQGEVAGTVRLGTIIDP 57
           + LF R+++GM +T  G  LL  A + L++  +L   A   R   GE++G++ +GTI+DP
Sbjct: 45  LQLFNRSAAGMVLTAEGNKLLPLAERVLADVQELRRHAADFRSSTGELSGSLAIGTILDP 104

Query: 58  DYIRLGMLLRHIVSFYPKMEIRLAHGISGFIMEQVAARKLDCGFYLGEVDDPAMCTLRLS 117
           ++IRLG  L+ +V  +P++  +LAH +SG ++ ++ A KLD GF+LG        ++ L+
Sbjct: 105 EFIRLGGFLKLLVERHPQLSTQLAHHMSGSVLNEIRAGKLDVGFFLG-APGQGFQSMELT 163

Query: 118 TLTYLVVAPPTWAGKIAEAGWREIAAMPWVGTPVYSSQHRLVREMFQEYGGEQTTVAEAD 177
           + TY V+AP  W  +++  GW+E++ +PW+ TP  S+ HRL+  +F ++  +  TVA  D
Sbjct: 164 SFTYKVIAPAGWKNRVSGKGWKELSRLPWIWTPPESAHHRLLSRIFAQHQVKPHTVALVD 223

Query: 178 QESSMASLVKMGVGLCLLRNDVAMAAQGKGELVIWDKIEQHCALSFIYLKSCSSDVGVST 237
           QESSM  LVK GVGL L R  +A+       LVI D +E    LSFI L+    D  +  
Sbjct: 224 QESSMLDLVKSGVGLSLARASIALNQAHAHGLVIADAVELSTQLSFICLEKWQHDPVIQA 283

Query: 238 LLGVIKDVW 246
           +  +++++W
Sbjct: 284 VFRLLQEIW 292


>gi|300309384|ref|YP_003773476.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 15/183 (8%)

Query: 1   VTLFERTSSGMTITKPGELLLEHARKTLSNAVDLVNTARKMQGEVAGTVRLGTIIDPDYI 60
           V L +R++  M +T+ GE   E A++ L+   D  N  R  +    G +R   ++ P   
Sbjct: 40  VRLLQRSTHAMKMTEDGERCYERAKELLAGWDDFENELRGARQHAEGALR---VVVPHAF 96

Query: 61  RLGMLLRHIVSF---YPKMEIR-LAHGISGFIMEQVAARKLDCGFYLGEVDDPAMCTLRL 116
               L+  +  F   +P++ +  L H  +   + Q     +DC   +GEV+DP++  + L
Sbjct: 97  GQKQLIGPLAQFMRQHPRITVEWLLHDRAADFISQ----GIDCAIQVGEVNDPSVVAIHL 152

Query: 117 STLTYL-VVAPPTWAGKIAEAGWREIAAMPWVGTPVYSSQHRLVREMFQEYGGEQTTVAE 175
           + +  + VVAP   AG+       ++A +PW+  P +   +R    +   + GEQ  V+ 
Sbjct: 153 AEVPRMTVVAPSVLAGRPMPRHPADLAELPWIAIPAF---YRREVTLTHAHTGEQRQVSF 209

Query: 176 ADQ 178
             Q
Sbjct: 210 RPQ 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 763,681
Number of extensions: 29710
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 4
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)