BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0186.0012.p
         (375 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310006|ref|YP_003774098.1| pyruvate kinase II protein [Her...   176   3e-45

>gi|300310006|ref|YP_003774098.1| pyruvate kinase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  176 bits (446), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 152/269 (56%), Gaps = 7/269 (2%)

Query: 65  NRQTKIVATLGPASTEPELLRALFLAGADVFRLNFSHGSHKEQQTRYLAIRALEREFDRP 124
           +R TKIVAT+GPAS++ E L  +  AG DV RLNFSHG  ++   R   +R +  E  + 
Sbjct: 2   SRATKIVATIGPASSDRETLTRMIRAGVDVVRLNFSHGKPQDHIDRATLVREVADECGKK 61

Query: 125 IAILMDLQGPKLRVGTFHLGYAQLSAGQDFRFDLDPSPGDQTRAPLLHPEIYEAVRPGDQ 184
           +AI+ DLQGPK+RVG F  G   L+ G  F  D D   G+Q R  L +  +   ++  D 
Sbjct: 62  VAIMADLQGPKIRVGKFENGKIMLANGDKFILDADCQMGNQERVGLDYKALPRDLKGNDV 121

Query: 185 LLVDDGKLRFSVVESGSDYCRVLALNNGIISNRKGVNVPTAILPLSALTPKDRIDLDFGL 244
           LL++DG +   V     +    +    G +SN KG+N     L   ALT KD  D+   +
Sbjct: 122 LLLNDGLIVLKVERVMGNEIHTVVKIGGELSNNKGINRQGGGLSAPALTAKDMDDIKTAM 181

Query: 245 ALGVDWIALSFVQSADDIEELKQI--VKG-----RASIMAKLEKPSAIDQLDEIIAVADG 297
           +   D++A+SF ++A D+E  +Q+  V G     +  ++AK+E+  AI  L EI+  +DG
Sbjct: 182 SFQADYVAVSFPKNATDMEMARQLSNVAGEPFGHKPMMIAKIERAEAIPLLQEILDASDG 241

Query: 298 LMVARGDLGVEMPPEDVPGLQKSIVHACR 326
           +MVARGDL VE+    VPGLQK ++   R
Sbjct: 242 IMVARGDLAVEVGNAAVPGLQKRMIKMAR 270


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,206,330
Number of extensions: 52705
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,207,925
Effective search space: 347882400
Effective search space used: 347882400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)