BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0186.0011.p
         (503 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311642|ref|YP_003775734.1| 1,4-alpha-glucan branching prot...   573   e-164
gi|300311818|ref|YP_003775910.1| 1,4-alpha-glucan branching prot...   531   e-152

>gi|300311642|ref|YP_003775734.1| 1,4-alpha-glucan branching protein
           [Herbaspirillum seropedicae SmR1]
          Length = 819

 Score =  573 bits (1477), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 263/323 (81%), Positives = 293/323 (90%), Gaps = 1/323 (0%)

Query: 62  VPAHFPSDGHGLAYFDGTPLYEHSDPREGFHQDWNTLIYNLGRNEVRGFMIASALEWLEH 121
           VPAHFPSD HGLAYFDGTPLYEH DPREG HQDWNT IYNLGR+EVRGF+IASALEWLEH
Sbjct: 428 VPAHFPSDPHGLAYFDGTPLYEHGDPREGIHQDWNTHIYNLGRHEVRGFLIASALEWLEH 487

Query: 122 YHVDGLRVDAVASMLYRDYSRAAGEWVPNIHGGRENLESVDFLRELNQTVAERCPGALMI 181
           +HVDGLRVDAVASMLYRDYSR++G+WVPNIHGGRENLE+VDFLRELNQTVAERCPGALMI
Sbjct: 488 FHVDGLRVDAVASMLYRDYSRSSGQWVPNIHGGRENLEAVDFLRELNQTVAERCPGALMI 547

Query: 182 AEESTSWPGVTAPVKEGGLGFSYKWNMGWMHDTLSYVEEDSIYRRYHHHNFTFGMIYAYS 241
           AEEST+WPGVTAPV EGGLGF+YKWNMGWMHDTL YVE DSIYRRYHHH+ TFGMIYA+S
Sbjct: 548 AEESTAWPGVTAPVSEGGLGFTYKWNMGWMHDTLRYVELDSIYRRYHHHDITFGMIYAFS 607

Query: 242 EAFVLPISHDEVVHGKRSLLEKMPGDYWQKLANLRAYLGFMWTHPGKKLLFMGCEFGQYQ 301
           E+FVLPISHDEVVHGK +LL+KM GD WQ+ ANLRAYLGFMWTHPGKKLLFMGCEF + +
Sbjct: 608 ESFVLPISHDEVVHGKGTLLQKMAGDAWQRFANLRAYLGFMWTHPGKKLLFMGCEFAETR 667

Query: 302 EFDHDKSPQWDLLDDPRHRSIQRLVRDLNRLYASLPPLHLNDSRAEGFSWVVGNDSVNSV 361
           EFD D+SP WDLLDD  HR +QRLVRDLNRLYA  P L+ +D+ A+GFSWVVGND +NSV
Sbjct: 668 EFDPDRSPHWDLLDDAHHRGVQRLVRDLNRLYAGTPALYRHDTEAKGFSWVVGNDELNSV 727

Query: 362 FAYFRHGSEEDEPLLVAVNMTPV 384
           FAY R  ++++ P+LV +NMTPV
Sbjct: 728 FAYLRQ-TDDEAPVLVVINMTPV 749


>gi|300311818|ref|YP_003775910.1| 1,4-alpha-glucan branching protein
           [Herbaspirillum seropedicae SmR1]
          Length = 804

 Score =  531 bits (1367), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/335 (75%), Positives = 284/335 (84%), Gaps = 10/335 (2%)

Query: 62  VPAHFPSDGHGLAYFDGTPLYEHSDPREGFHQDWNTLIYNLGRNEVRGFMIASALEWLEH 121
           VPAHFPSD HGLA FDGT LYEH+DPREGFHQDWNTLI+NLGRNEVRGF+IASALEWLEH
Sbjct: 402 VPAHFPSDQHGLAQFDGTALYEHADPREGFHQDWNTLIFNLGRNEVRGFLIASALEWLEH 461

Query: 122 YHVDGLRVDAVASMLYRDYSRAAGEWVPNIHGGRENLESVDFLRELNQTVAERCPGALMI 181
           +HVDGLRVDAVASMLYRDYSR  GEWVPNIHGGRENLE+V FLRELN  VA+RCPGALMI
Sbjct: 462 FHVDGLRVDAVASMLYRDYSRKEGEWVPNIHGGRENLEAVAFLRELNTVVAQRCPGALMI 521

Query: 182 AEESTSWPGVTAPVKE----GGLGFSYKWNMGWMHDTLSYVEEDSIYRRYHHHNFTFGMI 237
           AEESTSWPGVTAPVKE     GLGFSYKWNMGWM+DTL Y++ D ++RRYHHH+ TFG++
Sbjct: 522 AEESTSWPGVTAPVKEEGDHHGLGFSYKWNMGWMNDTLRYMQHDPLFRRYHHHDMTFGLL 581

Query: 238 YAYSEAFVLPISHDEVVHGKRSLLEKMPGDYWQKLANLRAYLGFMWTHPGKKLLFMGCEF 297
           Y +SE F+LPISHDEVVHGKR+LL KMPGD W++ AN+RAY GFMWTHPGKKLLFMG EF
Sbjct: 582 YGFSENFILPISHDEVVHGKRALLNKMPGDQWRRFANVRAYFGFMWTHPGKKLLFMGSEF 641

Query: 298 GQYQEFDHDKSPQWDLLDD-----PRHRSIQRLVRDLNRLYASLPPLHLNDSRAEGFSWV 352
           GQ  EFDHDKSP W LLD+       HR +++LV DLNRLY S P LH  D RA+GF+W 
Sbjct: 642 GQPDEFDHDKSPYWHLLDEHAGHPAEHRQLRQLVGDLNRLYCSEPALHQRDCRADGFAWA 701

Query: 353 VGNDSVNSVFAYFRHGSEEDEPLLVAVNMTPVRAV 387
           VG+DSVNSV AYFR+ ++E  P+LV VN+TPV  V
Sbjct: 702 VGDDSVNSVLAYFRY-ADEGPPVLVVVNLTPVPRV 735


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,690,500
Number of extensions: 73914
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 503
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,198,455
Effective search space: 496160370
Effective search space used: 496160370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)