BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0186.0010.p
         (106 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra...    96   5e-22
gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro...    75   8e-16
gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra...    64   2e-12

>gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 536

 Score = 96.3 bits (238), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 69/104 (66%)

Query: 1   VSDWHGNIFAGIKRTIAIAKSSDASLAVFFADDAKQASKRSLELKTAVENRLSTPEEKRI 60
           ++DW+ N+ AGI+RTIAIAKSSD +L  +FA +   +SK S E +  VE  LSTPEEK +
Sbjct: 56  MADWYTNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKAL 115

Query: 61  YEQIGVVRDNFNKHRDAIGELKKEGRQEDAERVLQEQFIPAARA 104
           +++IG +R  +   RD I + K  G  E+A R+L + F+P A A
Sbjct: 116 FQKIGELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATA 159


>gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis
           protein I [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score = 75.5 bits (184), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 67/98 (68%)

Query: 1   VSDWHGNIFAGIKRTIAIAKSSDASLAVFFADDAKQASKRSLELKTAVENRLSTPEEKRI 60
           VSDW+  I   ++RT AIAKSSD SLA FFADDA  AS+ S E + A+E  + + +EK +
Sbjct: 56  VSDWYRTIHTSVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAV 115

Query: 61  YEQIGVVRDNFNKHRDAIGELKKEGRQEDAERVLQEQF 98
           + ++G VR ++ K+RDAI + K EGR E+A ++L   F
Sbjct: 116 FTKLGEVRKDYIKYRDAISKAKAEGRTEEAAQILAGPF 153


>gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 515

 Score = 63.9 bits (154), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%)

Query: 1   VSDWHGNIFAGIKRTIAIAKSSDASLAVFFADDAKQASKRSLELKTAVENRLSTPEEKRI 60
           VS W+  +   I+RT  + KS D  L  F A +A  +SK S +    VE  L++ EEK++
Sbjct: 54  VSQWNTLLLIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKM 113

Query: 61  YEQIGVVRDNFNKHRDAIGELKKEGRQEDAERVLQEQFIPAARA 104
           +  I V R  F   RD I   KK+G     E + Q+Q++  A++
Sbjct: 114 FAAINVARKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKS 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 280,719
Number of extensions: 8816
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 3
Length of query: 106
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 34
Effective length of database: 1,278,950
Effective search space: 43484300
Effective search space used: 43484300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)