BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0186.0006.p (341 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 247 1e-66 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 232 3e-62 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 231 7e-62 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 225 4e-60 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 224 7e-60 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 247 bits (630), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 133/340 (39%), Positives = 199/340 (58%), Gaps = 6/340 (1%) Query: 1 VLRDINLRIEPGEFFVLLGASSSGKSSLLRIIAGLNQDFSGALLLDGKDAAGIAPHLRNI 60 ++++++L I GEF LLG S SGK++ L ++AG G + LDG+ + PH RNI Sbjct: 37 IVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPHKRNI 96 Query: 61 GMVFQDYALWPHMSVRDNIAYGLVERRLPKPEIQERVGKVLERVGLTEFAARYPNQLSGG 120 GMVFQ+YAL+PHM++ N+AY L R++ + + +V + L+ V + +F RYP QLSGG Sbjct: 97 GMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQLSGG 156 Query: 121 QQQRTALARAIVIEPRVLLLDEPFSNLDHGLRGQLRQELRALQRSLGITTVFVTHDQEEA 180 QQQR ALAR +V +P+++L+DEP LD LR ++ EL+AL + LG+T V+VTHDQ EA Sbjct: 157 QQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSEA 216 Query: 181 MAMADRMAVIDNGVVQQIGTPAALYDYPGNSFMAGFVGDANLLSGVIERVNGDMLRFHSS 240 + M+DR+AV D GV+QQ+ LY+YP N F+A F+GD N G +E V G+ + Sbjct: 217 LTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCTVRLT 276 Query: 241 RLEDLYLPNHRDAHLGNCMIG-FRPHAIRINVGDAQRDGALVWLKGAVENSEFFGAMTRY 299 L N AH G + RP IR+ G + + ++ ++ +FG R Sbjct: 277 DGAALTGLNVHRAHAGQSITACVRPERIRLAAGGSAEPNS---IRASIAGLIYFGDHVRV 333 Query: 300 RVRVG--EVLIVADQMHYAGLAPFPVGTTVSLGIAPSQIR 337 R V E V + L+ G++V L +A ++R Sbjct: 334 RCTVAGQEDCFVKLSLSDPALSGLSEGSSVVLHVAQDRLR 373 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 232 bits (592), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 136/290 (46%), Positives = 188/290 (64%), Gaps = 12/290 (4%) Query: 2 LRDINLRIEPGEFFVLLGASSSGKSSLLRIIAGLNQDFSGALLLDGKDAAGIAPHLRNIG 61 L D++L GE LLG S GK++LLRIIAGL SG +LLDG+DA+ R +G Sbjct: 18 LNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDGEDASARHVRERQVG 77 Query: 62 MVFQDYALWPHMSVRDNIAYGL-VERRLPKPE---IQERVGKVLERVGLTEFAARYPNQL 117 VFQ YAL+ HM+V +NIA+GL V+ R +P I+E+V ++LE V L A RYP QL Sbjct: 78 FVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLELVQLDWLADRYPPQL 137 Query: 118 SGGQQQRTALARAIVIEPRVLLLDEPFSNLDHGLRGQLRQELRALQRSLGITTVFVTHDQ 177 SGGQ+QR ALARA+ +EPRVLLLDEPF LD +R +LR+ LR L L +T++FVTHDQ Sbjct: 138 SGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQ 197 Query: 178 EEAMAMADRMAVIDNGVVQQIGTPAALYDYPGNSFMAGFVGDANLLSGVIERVNGDMLRF 237 EEA+ +AD++ +++ G V+QIGTP A+Y++P + F+ GF+G+ NL G R++ +L Sbjct: 198 EEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNVNLFHG---RLHEGVLDA 254 Query: 238 HSSRLEDLYLPNHRDAHLGNCMIGF-RPHAIRINVGDAQRDGALVWLKGA 286 +R E N RDA +GF RPH + + +G +V L+ A Sbjct: 255 GGARFEAPGHDNIRDA----AGVGFVRPHDLDVERYSPGAEGIVVQLRRA 300 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 231 bits (589), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 138/308 (44%), Positives = 187/308 (60%), Gaps = 19/308 (6%) Query: 2 LRDINLRIEPGEFFVLLGASSSGKSSLLRIIAGLN-QDFSGALLLDGKDAAGIAPHLRNI 60 L+ ++L+I PGE VLLG S GK++ LR+IAGL D G +L +D + R + Sbjct: 26 LQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGRVLFGEEDVTMLPIEKRGV 85 Query: 61 GMVFQDYALWPHMSVRDNIAYGLVERRLPKPEIQERVGKVLERVGLTEFAARYPNQLSGG 120 GMVFQ+YAL+P+MSV +NIAYG+ R++ E ERV ++LE V L + R +QLSGG Sbjct: 86 GMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMVHLQGLSHRRVDQLSGG 145 Query: 121 QQQRTALARAIVIEPRVLLLDEPFSNLDHGLRGQLRQELRALQRSLGITTVFVTHDQEEA 180 Q+QR ALARA+ +EPRVLLLDEP + LD LR +R +L L RSLGIT ++VTHDQ EA Sbjct: 146 QKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHDQGEA 205 Query: 181 MAMADRMAVIDNGVVQQIGTPAALYDYPGNSFMAGFVGDANLLSGVIERVNGDMLRFHSS 240 MA+ DR+ V++ G + QIGTP +Y +P N F+A F+G N + G+ V GD L+ + Sbjct: 206 MALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVDGI---VAGDRLQLPTG 262 Query: 241 RLEDLYLPNHRDAHLGN-CMIGFRP---HAIRINVGDAQRDGALVWLKGAVENSEFFGAM 296 LP DA G FRP I I DA L+G + N+ F G Sbjct: 263 -----TLPLPPDAVAGQPAQALFRPEDVEVIDITEADAH------CLRGKLINTFFLGDR 311 Query: 297 TRYRVRVG 304 TR+ + +G Sbjct: 312 TRFEIEIG 319 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 225 bits (573), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 109/218 (50%), Positives = 152/218 (69%) Query: 1 VLRDINLRIEPGEFFVLLGASSSGKSSLLRIIAGLNQDFSGALLLDGKDAAGIAPHLRNI 60 ++R +++ I GEF VL+G S GKS+LLR++AGL + G +L+ G + P R+I Sbjct: 18 IIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIGGTVVNNVQPKDRDI 77 Query: 61 GMVFQDYALWPHMSVRDNIAYGLVERRLPKPEIQERVGKVLERVGLTEFAARYPNQLSGG 120 MVFQ+YAL+PHM+VRDN+A+ L + K + ERV K + +GL + RYP QLSGG Sbjct: 78 AMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILGLNQLLDRYPRQLSGG 137 Query: 121 QQQRTALARAIVIEPRVLLLDEPFSNLDHGLRGQLRQELRALQRSLGITTVFVTHDQEEA 180 Q+QR A+ RAIV +P+V L DEP SNLD LR Q+R E++ L + L T+++VTHDQ EA Sbjct: 138 QRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQRLKTTSIYVTHDQIEA 197 Query: 181 MAMADRMAVIDNGVVQQIGTPAALYDYPGNSFMAGFVG 218 M MAD++ V+ +G+V+Q G P LYDYP N F+AGF+G Sbjct: 198 MTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIG 235 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 224 bits (571), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 138/326 (42%), Positives = 185/326 (56%), Gaps = 13/326 (3%) Query: 1 VLRDINLRIEPGEFFVLLGASSSGKSSLLRIIAGLNQDFSGALLLDGKDAAGIAPHLRNI 60 VL ++L I GEF VLLG S GKS++LR+IAGL G L + G + RN+ Sbjct: 19 VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGTLRIGGTVVNDLPARERNV 78 Query: 61 GMVFQDYALWPHMSVRDNIAYGLVERRLPKPEIQERVGKVLERVGLTEFAARYPNQLSGG 120 MVFQ+YAL+PHMSV DNIA+GL + P EI RV +V + L R P +SGG Sbjct: 79 AMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAALLNLEALLERKPRAMSGG 138 Query: 121 QQQRTALARAIVIEPRVLLLDEPFSNLDHGLRGQLRQELRALQRSLGITTVFVTHDQEEA 180 QQQR A+ARAI+ P V L DEP SNLD LR QLR +++ L + L TTV+VTHDQ EA Sbjct: 139 QQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTHDQLEA 198 Query: 181 MAMADRMAVIDNGVVQQIGTPAALYDYPGNSFMAGFVGDA--NLLSGVIERVNGDMLRFH 238 M +ADR+ ++ +G + Q G+PA LY YP N F AGF+G N LSG ++R +G + F Sbjct: 199 MTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAMNFLSGTVQRQDGQL--FI 256 Query: 239 SSRLEDLYLPNHRDAHLGNCM---IGFRPHAIRINVGDAQRDGALVWLKGAVENSEFFGA 295 + + L R + L + M + RP +RI + A + +VE E GA Sbjct: 257 ETAHQRWALTGERFSRLRHAMAVKLAVRPDHVRI--AGEREPAASLTCPVSVELVEILGA 314 Query: 296 MTRYRVRVGE----VLIVADQMHYAG 317 R G+ L+ AD++ G Sbjct: 315 DALLTTRCGDQTLTALVPADRLPQPG 340 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,096,812 Number of extensions: 47933 Number of successful extensions: 459 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 146 Length of query: 341 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 255 Effective length of database: 1,212,660 Effective search space: 309228300 Effective search space used: 309228300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)