BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0186.0005.p (500 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [... 71 2e-13 gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [... 68 2e-12 gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease [... 68 2e-12 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 66 8e-12 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 65 1e-11 >gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 603 Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 120/470 (25%), Positives = 209/470 (44%), Gaps = 59/470 (12%) Query: 10 SLIAVPL----AWIATRMRFRGWLLVQVLGVLPLVMPPFVAAFALQPFLGANGAVNLLLQ 65 +LIAVPL A++ R G + ++P+ + P V F +G G + ++ Sbjct: 89 ALIAVPLGGMLAFLMVRTDLPGRSFIAPALMVPIFVSPMVIGFGYVVSMGPVGFYTVWVK 148 Query: 66 RW---FGFT-LPF-MEGMNGVVLVESIHYFPFVLLNLITSLRRIDLSMEESAVTLGSTRW 120 FGF P+ + +V++ + + P V L +LR + +EE+A G++ Sbjct: 149 NLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPHVYLYASAALRSLGSDVEEAARVAGASPL 208 Query: 121 RRFRRIVLPLALPGYVAGAAIVFMRAFEDLGTPLILG--VTNMLAPLTYLRVMSVGVDDP 178 + + LP+ +P +VF FE G L+LG +++ P TYL ++ + P Sbjct: 209 QVALNVSLPMIMPALAYSGVLVFFLGFEVFGLVLVLGDPEGHLVLP-TYLYKLTNKLGTP 267 Query: 179 LSYVIAMIMLAFSALTL---YLAGYFLRDKDNAYMPYLGGGVMLPVPARPVLGRW---PT 232 +++A + + A+T+ L + LR N Y+ G G A P LG+W Sbjct: 268 SYHLMAAVAVCLVAVTMPLVMLQRWLLRSA-NKYVAIKGKGAR--QKALP-LGKWRWVAF 323 Query: 233 VFSYGWVVVTLLFVL--------LPHLGLLSLSLADIWSFSILPDSWTTRNYDTIATDSG 284 V GW++ T++ L + H G +SL ++ +F L + W D + G Sbjct: 324 VLIAGWLLFTVIIPLSGIGLRTFVSHWGD-GVSLLEVLTFENLLNVW-----DQPSLVRG 377 Query: 285 AALINTFLYCGLAAGIDVTLGGVIAYVVLRTRLAGRNVLARLAGVSLAVPGMVLALGYLR 344 +INT L + + V IA + R + L V AVPG++ L +L Sbjct: 378 --IINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLVPRAVPGLLAGLSFLW 435 Query: 345 FF-----------RDINVPL------SEAP----FSSTWGMIALAYAVQQLPYVVKVCMT 383 F + I+ P+ S P ST + LAY+V + Y +++ T Sbjct: 436 VFLFVPSLLDSALKGIDNPIALWLVDSFIPALRGLRSTIFSVWLAYSVVWMAYGLRLINT 495 Query: 384 ALQAIDPNLEAAAENLGSTRTRVLQRIVIPLMAGGLLLGFVVSFMAAATE 433 AL + P LE AA +G++R+RV + + +PL+ GL+ +++ F+ E Sbjct: 496 ALLQVGPELEEAARAVGASRSRVTRDVTLPLVRYGLVGAWLMVFLIFERE 545 >gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 114/432 (26%), Positives = 195/432 (45%), Gaps = 32/432 (7%) Query: 77 GMNGVVLVESIHYFPFVLLNLITSLRRIDLSMEESAVTLGSTRWRRFRRIVLPLALPGYV 136 G G++L E + FP L+ L+++L + D + ++A +G++RWR F + LP G Sbjct: 161 GFWGILLGEVFYTFPHALMILLSALSQADGRLYDAAQAMGASRWRIFTTVTLPATRYGIF 220 Query: 137 AGAAIVFMRAFEDLGTPLIL-GVTNMLAPLTYLRVMSVGVDD-PLSYVIAMIMLAFSALT 194 +VF D G P I G ++LA Y V VG +I +++L + LT Sbjct: 221 GALCLVFTLTITDFGVPKITGGAYSVLAVEAYKAV--VGQQQFGRGALIGLLLLVPALLT 278 Query: 195 LYLAGYFLRDKDNAYMPYLGGGVMLPVPARPVLGRWPTVFSYGWVVVTLLFVLLPHLGLL 254 L + L+ + A M +P P G + + + +L +++ +G Sbjct: 279 FTLDAW-LQRRQRASMSSR-SETYVPQPDWRRDG--ANLLAVALIASAILMMIVVAMG-- 332 Query: 255 SLSLADIWSFSILPDSWTTRNYDTIATDSGA--ALINTF-LYCGLA-AGIDVTLGGVIAY 310 SL +W +++ T ++YD D G A N+ L CG + AG + G A+ Sbjct: 333 -ASLVKLWPYNL---QLTLQHYDFDNMDGGGWLAYWNSLRLACGTSVAGTLLIFCG--AW 386 Query: 311 VVLRTRLAG--RNVLARLAGVSLAVPGMVLALGYLRFFRDINVPLSEAPFSSTWG---MI 365 ++ +TR +L L + +AVPG+VL LG L FF N P + PF+ +G ++ Sbjct: 387 LMEKTRGQAWLSTLLRMLCFLPMAVPGLVLGLGSLLFF---NHPAN--PFNFLYGTMTLL 441 Query: 366 ALAYAVQQLPYVVKVCMTALQAIDPNLEAAAENLGSTRTRVLQRIVIPLMAGGLLLGFVV 425 L V +TAL+ +DP EAA+ +L + R+ +PL LL F Sbjct: 442 VLCCVVHFYTTAQLTAVTALKQLDPEFEAASLSLKVPLLKTFIRVTVPLCLPQLLEIFRY 501 Query: 426 SFMAAATELPITMLLSNNEAQAPMSYEIYLYMQSVSGRGPGAALAIVAIAVVAICASIIH 485 F+++ T + + L + ++ L M GP AA++ + + A + ++H Sbjct: 502 LFVSSMTTVSAVIFLYRPDTV--LASVAVLNMDDAGDVGPAAAMSTLILLTSAAASLLMH 559 Query: 486 ILLRRRLRSTTA 497 + RR L A Sbjct: 560 LGGRRWLARAQA 571 >gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 547 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 122/445 (27%), Positives = 193/445 (43%), Gaps = 58/445 (13%) Query: 22 RMRFRGWLLVQVLGVLPLVMPPFVAAFALQPFLGANGAVNLLLQRWF-GFTLPFMEGMNG 80 R R W +L LP+ MP +V+A+A FL G V L+ WF GF + + G+ G Sbjct: 74 EFRGRRWFSWALL--LPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPGFRME-VRGLPG 130 Query: 81 VVLVESIHYFPFVLLNLITSLRRIDLSMEESAVTLGSTRWRRFRRIVLPLALPGYVAGAA 140 + + + +P+ L +L + E+A LG+ R R+ LPLA P AGAA Sbjct: 131 AICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPLARPALAAGAA 190 Query: 141 IVFMRAFEDLGTPLILGVTNMLAPLTYLRVMSVGVDDPLSYVIAMIMLAFSALTLYLAGY 200 + M D G G+T T + V +DD L A A L Sbjct: 191 LALMETLADYGVSAYFGLTTF---TTGIYKAWVVLDDRL----AAAQYASLLLLFVTVLL 243 Query: 201 FLRDKDNAYMPYL---GGGVMLPVPAR-PVLGRWPTVFSYGWVVVTLLFVLLPHLGLLSL 256 +L ++ M + GG AR PVL R T + W+V L V Sbjct: 244 WLERREQGRMRFAATRGGRGHDGAEARLPVLSRAQTALA--WLVCGLPVV---------- 291 Query: 257 SLADIWSFSILPDSWTTRNYDTIATDSG---AALINTFLYCGLAAGIDVTLGGVIAYVVL 313 L + +IL W + + D G + N+F + G+AA + L + + + Sbjct: 292 -LGFVLPVAILLRLWWSEAGQGMGFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALR 350 Query: 314 -----RTRLAGRNVLARLAGVSLAVPGMVLALGYLRFFRDINVPLSEAPFSSTW-----G 363 R + A + ARLAG+ A+PG V+A+G L L A S W G Sbjct: 351 SGGLPRLQAALLRLTARLAGMGYAIPGSVIAVGIL---------LPVAWLQSLWPGAGLG 401 Query: 364 MIALAYAVQQL-PYVVKVCMTALQAIDP-------NLEAAAENLGSTRTRVLQRIVIPLM 415 ++ A ++ + Y+V+ A+Q+++ +L+ AA +LGS+R + R+ +PL+ Sbjct: 402 VLLTASSLGVIYAYLVRFTAVAVQSVESGYTRIPASLDEAARSLGSSRAVIAWRVHMPLL 461 Query: 416 AGGLLLGFVVSFMAAATELPITMLL 440 L + ++ F+ ELP T+LL Sbjct: 462 WRSLAVAALMVFVDVVKELPATLLL 486 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 37 LPLVMPPFVAAFALQPFLGANGAVNLLLQRWFGFTLPFMEGMNGVVLVESIHYFPFVLLN 96 LPLV+PP V + L G GA+ L+R G L F G VL ++ FP VL + Sbjct: 50 LPLVLPPTVLGYYLLVLFGRRGALGAWLER-MGIELVFT--WQGAVLASTVVAFPLVLKS 106 Query: 97 LITSLRRIDLSMEESAVTLGSTRWRRFRRIVLPLALPGYVAGAAIVFMRAFEDLGTPLIL 156 + +D ME++A LG + F R+ LPLA+ G +AG + F RA + G L++ Sbjct: 107 ARAAFESVDHQMEDAARVLGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMV 166 Query: 157 -----GVTNMLAPLTYLRVMSVGVDDPLSYVIAMIMLAFSALTLYLAGYFLRDKDNAYM 210 G T L+ Y V + DD + ++ +I + L +AG D+ + Sbjct: 167 AGNLPGRTQTLSVAIYEAVQA--GDDGSATLLVVITSITCIVLLMVAGRLTPDRAQQQL 223 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 4/182 (2%) Query: 22 RMRFRGWLLVQVLGVLPLVMPPFVAAFALQPFLGANGAVNLLLQRWFGFTLPFMEGMNGV 81 R RF G L+ + PL P V F + G G + L FG +L F + G+ Sbjct: 103 RHRFPGQALLLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALTNGLFGESLVFAYSLAGL 162 Query: 82 VLVESIHYFPFVLLNLITSLRRIDLSMEESAVTLGSTRWRRFRRIVLPLALPGYVAGAAI 141 L P V+L ++ + ++D S+EE+A +LG+ W+ +VLP LP V+ AI Sbjct: 163 FLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAI 222 Query: 142 VFMRAFEDLGTPLILGVTNMLAPLT----YLRVMSVGVDDPLSYVIAMIMLAFSALTLYL 197 F + GT L + P+T + + LS V+ +I A AL L Sbjct: 223 CFATSVGAFGTAFTLAANIDVLPMTIYNEFTGYANFATAASLSIVLGVITWAVLALARSL 282 Query: 198 AG 199 G Sbjct: 283 TG 284 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,361,579 Number of extensions: 54502 Number of successful extensions: 362 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 12 Length of query: 500 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 411 Effective length of database: 1,198,455 Effective search space: 492565005 Effective search space used: 492565005 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)