BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0186.0004.p
         (433 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...    91   2e-19

>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 16/290 (5%)

Query: 11  LVPLGRSGVTAALLGGLQASTAMAIAGEVTVVTSFPKEVTDTYKKAFEARHPGTKIQVLN 70
           L  L  S + A +L   QA  A  +    TV T+   +    Y+ AF   +P  +I+ + 
Sbjct: 34  LFSLFASVIGAGMLFSAQAHAATTL----TVYTALEADQIKAYQAAFHKANPDIEIKWVR 89

Query: 71  KNTNAAVIYIERTAAGSRPDVFWASAPDAFEVMARNNLFERIPEVRNPETPDQI----GN 126
            +T      +    A  + DV W  A  +  ++ +  +         P  P  +      
Sbjct: 90  DSTGIVTAKLLAEKANPQADVIWGLAATSLALLDKEGML-------MPYAPQGLSAIDAK 142

Query: 127 YPINDPEQRYYGQALSGYGIMWNERYLAAHQLPRPTDWGDLTKSVYFGHVALSSPSWSGT 186
           Y        + G  +    I +N        LP+PT W DLTK VY G + + +P+ SGT
Sbjct: 143 YRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKIVMPNPASSGT 202

Query: 187 THLMVEAILQSSGWDRGWSRLLQIAANSAAITERSFGVPEGVNTGRYGIGMVIDFFAFVG 246
            +L V A LQ  G D+GW+ +  +  N    T       +   TG + IG+  ++ A   
Sbjct: 203 GYLDVSAWLQMMGEDKGWAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKT 262

Query: 247 KRNGFPVDFTYPAV-TNFVPASIGLINGARNPVDARKFIAFTLSNDGQKL 295
           K+ G P+D   P+    +   +  ++ G+++   A+K   F+ S +   L
Sbjct: 263 KKEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSASKEAMAL 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,383,149
Number of extensions: 59032
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,203,190
Effective search space: 415100550
Effective search space used: 415100550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)