BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0186.0001.p
         (58 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310163|ref|YP_003774255.1| response regulator protein [Her...    82   8e-18
gi|300310718|ref|YP_003774810.1| phosphate regulon two-component...    52   8e-09

>gi|300310163|ref|YP_003774255.1| response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score = 82.0 bits (201), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 47/55 (85%)

Query: 1   VAYVLNSGADDFLQRPFEPLELIARINAMMRRYAPLNDRRSIEYAGFSLDRESKK 55
           VA VL++GADDFLQRPF+ +EL+ARINA+MRR AP N+RR IEYAGF L R++ K
Sbjct: 87  VARVLDNGADDFLQRPFDAVELVARINAVMRRCAPKNNRRVIEYAGFQLQRDTAK 141


>gi|300310718|ref|YP_003774810.1| phosphate regulon two-component
           response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score = 52.4 bits (124), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 36/51 (70%)

Query: 5   LNSGADDFLQRPFEPLELIARINAMMRRYAPLNDRRSIEYAGFSLDRESKK 55
           LN GADD++ +PF P EL+AR+ A++RR AP    ++++Y   S+D E ++
Sbjct: 98  LNEGADDYVTKPFSPKELVARVQALLRRKAPEIGSQALKYRDISIDVERRQ 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 165,831
Number of extensions: 4766
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 58
Length of database: 1,619,870
Length adjustment: 31
Effective length of query: 27
Effective length of database: 1,473,085
Effective search space: 39773295
Effective search space used: 39773295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)