BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0185.0044.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311714|ref|YP_003775806.1| periplasmic or secreted lipopro... 277 5e-76 gi|300311708|ref|YP_003775800.1| periplasmic or secreted lipopro... 172 2e-44 >gi|300311714|ref|YP_003775806.1| periplasmic or secreted lipoprotein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 277 bits (708), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 132/215 (61%), Positives = 175/215 (81%) Query: 1 MKTDHQIKQDVVEELAWESAVDDNVIGVEVCDGVVTLSGNLDSYAEKYAAEKAVQRVSGV 60 MK+DHQ++Q+V++ELAW+ AVDD IGVEV +G+VTL+G+L SYAEKYAA++AV+R+ GV Sbjct: 1 MKSDHQLRQEVMDELAWDPAVDDKRIGVEVSEGIVTLAGHLSSYAEKYAAQRAVERIGGV 60 Query: 61 RGLAVEIDVVLPGSSKRTDADIARVAAQGLDWNALLPKDKVKVMVEDGWITLSGEVEHQY 120 RG+AVE+DV LPGSS+R D++IA A L+WN +LPK+ +++ VEDGWITLSGEVE Y Sbjct: 61 RGIAVELDVRLPGSSERLDSEIAASARNALEWNTVLPKEGIQIKVEDGWITLSGEVEFAY 120 Query: 121 QRMAAESTLRSLLGVVGISNQIAVKHVARPADIKTHIEAALQRRAHSTAKAIDVVVNGEQ 180 QR+AAE +LR+L G++GISNQ+ V+ A P DIKT IEAALQRRAH K++ V V+ + Sbjct: 121 QRLAAEQSLRNLFGLIGISNQLKVEAKAAPKDIKTGIEAALQRRAHLQTKSLRVQVDNKT 180 Query: 181 ITLSGSVASLAERHEAFNAAVKTPGVTKVVDKLSV 215 +TLSG V SLAERHEA AA+ TPGV +V+D++ V Sbjct: 181 VTLSGKVGSLAERHEACKAALHTPGVEQVIDEIIV 215 >gi|300311708|ref|YP_003775800.1| periplasmic or secreted lipoprotein [Herbaspirillum seropedicae SmR1] Length = 215 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/215 (46%), Positives = 136/215 (63%) Query: 1 MKTDHQIKQDVVEELAWESAVDDNVIGVEVCDGVVTLSGNLDSYAEKYAAEKAVQRVSGV 60 M +++Q +++EL WE +VD I V V DG+VTLSG + +A+K AE+A +RV+ V Sbjct: 1 MSIASELQQKIIDELEWEPSVDARHINVAVKDGIVTLSGYVPRFADKKNAEQAAKRVANV 60 Query: 61 RGLAVEIDVVLPGSSKRTDADIARVAAQGLDWNALLPKDKVKVMVEDGWITLSGEVEHQY 120 + + E+ V L G+SKR+D +IA VA L NA LP+DKV V V DGW+TL GEVE Y Sbjct: 61 KAVVDELLVNLDGASKRSDLEIAEVALTALRANANLPRDKVTVTVADGWVTLDGEVEWHY 120 Query: 121 QRMAAESTLRSLLGVVGISNQIAVKHVARPADIKTHIEAALQRRAHSTAKAIDVVVNGEQ 180 Q +AE+++R LLGV G+ N+I VK R D+K+ I AL R A A IDV ++ Sbjct: 121 QHDSAENSVRHLLGVKGVLNKIQVKSNVRVTDVKSKIHDALVRNAQIDASKIDVAIDHGV 180 Query: 181 ITLSGSVASLAERHEAFNAAVKTPGVTKVVDKLSV 215 TLSG V S AE+ A AA PGVT V + +SV Sbjct: 181 ATLSGKVKSWAEKEPAGFAAWSDPGVTVVKNNISV 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 642,141 Number of extensions: 24841 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 2 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)