BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0042.p
         (196 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311803|ref|YP_003775895.1| universal stress protein [Herba...    95   5e-21

>gi|300311803|ref|YP_003775895.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score = 94.7 bits (234), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 1   LARFATLAQQYGIASVQQLHVDDDAASALSAHGSAADLIILGKNDLQHPARREESDLVEF 60
           L  F  +A   G+ S ++  VDDDA   L+     ADL+++ + DL        +DL E+
Sbjct: 69  LENFDKIANSVGVPSCEKRFVDDDAEGGLALQARYADLVVVSQADLDDADDSFLTDLPEY 128

Query: 61  VTLNTTAPVFTV---NEKPFSWRHALVAWNGSSVAARXV-------EKVDLVSAVIFGDG 110
           V LN+  PV  +    E     ++ALVAW+GS  + R V        + D V+ VIF   
Sbjct: 129 VMLNSPRPVLIIPSAGEFKHVGKNALVAWDGSMESTRAVTAALPLLRQADNVTVVIFNSD 188

Query: 111 IDPSTHAIASEDALRQCLSTIPKPVNVIHRTETPDTGHALLALADELDADLIVMGCVAHP 170
               TH       +   L+     V V       D G+ALL+LA +  +DL+VMG   H 
Sbjct: 189 KRLGTHGEQPGADIALYLARHGVTVEVAQEQTPLDIGNALLSLAADKGSDLLVMGGYGHT 248

Query: 171 RWRETLLGGTTGVVIAESSTSLLLS 195
           R+RE LLGG T  ++   +  +L++
Sbjct: 249 RFREVLLGGVTLTILKTMTLPVLMA 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 507,284
Number of extensions: 16730
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 116
Effective length of database: 1,241,070
Effective search space: 143964120
Effective search space used: 143964120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)