BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0038.p
         (388 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD ...   430   e-121
gi|300311270|ref|YP_003775362.1| HlyD family membrane-fusion pro...   276   3e-75

>gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD
           family secretion protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/307 (72%), Positives = 261/307 (85%)

Query: 26  WKQLRHTGPGADFASGNGRIEATEIDVAAKLPGRIGDILVSEGDFVAAGQPLAHMQTQVL 85
           W++L H GPG  F SGNGRIEATE+DVA KL GR+  ILV+EGDFV+AGQPLA MQ   L
Sbjct: 29  WQRLHHNGPGEGFTSGNGRIEATEVDVATKLGGRVDAILVNEGDFVSAGQPLARMQVLSL 88

Query: 86  QAQHAEASAQKQQAIATVSSAEAQVVVRESDFQAAQALVVQRESELEAAQRRLIRSETLV 145
           QAQ  EA A +QQ+++ V+SAEAQV VR+SD+QAA A  VQRESEL+AA+RRL RSE LV
Sbjct: 89  QAQRDEALAHQQQSLSAVASAEAQVAVRQSDYQAALAQTVQRESELDAARRRLARSEVLV 148

Query: 146 QEGASSIQEVDDDRTRVRTTQAALTAATAQTKAASAAISAARTQVSGASATVTAMAATVS 205
           +EGASS+QEVDDDR RVR+ +AA+TA+ AQ  AA AA+ AARTQVSGA +TVTA  ATV 
Sbjct: 149 REGASSVQEVDDDRARVRSMEAAVTASKAQVTAAEAAVVAARTQVSGARSTVTAAQATVQ 208

Query: 206 RIEADINDSALTAPRSGRVQYRVAQPGEVLGSGGKVLNLVDLSDVYMTFFVPEAVAGKLA 265
           RI+ DI+DS L APR+GRVQYR+AQPGEVLG GGKVLNLVDLSDVYMTFF+PE V GKLA
Sbjct: 209 RIKVDIDDSTLAAPRAGRVQYRIAQPGEVLGGGGKVLNLVDLSDVYMTFFLPEVVVGKLA 268

Query: 266 IGSDVRLILDAAPKYVIPAKVSYVASTAQFTPKTVETASERQKLMFRVKARIDRELLLKH 325
           +GS+ R+ILDAAP+YVIPA++S+VASTAQFTPKTVETASERQKLMFRVKA+ID  LL +H
Sbjct: 269 LGSEARIILDAAPQYVIPARISFVASTAQFTPKTVETASERQKLMFRVKAQIDPALLQQH 328

Query: 326 LQLVKTG 332
           L LVKTG
Sbjct: 329 LTLVKTG 335


>gi|300311270|ref|YP_003775362.1| HlyD family membrane-fusion
           protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  276 bits (705), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/317 (48%), Positives = 211/317 (66%)

Query: 1   MNTPSRRTLYLLLLAFAALAIAWYAWKQLRHTGPGADFASGNGRIEATEIDVAAKLPGRI 60
           MN   +  L+  LL     A+ W  W   R     A   S NGR+EATE+D+ ++L GRI
Sbjct: 1   MNRSLQHPLFAGLLLVVLAAVGWTGWAWWRDADAPAGLVSSNGRLEATEVDIGSRLGGRI 60

Query: 61  GDILVSEGDFVAAGQPLAHMQTQVLQAQHAEASAQKQQAIATVSSAEAQVVVRESDFQAA 120
             +LV EG+ V AGQ LA++Q   L AQ  EA AQ+Q+A   V+ A+AQ+ +R S+ + A
Sbjct: 61  RHMLVDEGEAVQAGQVLAYLQVDSLHAQLREARAQQQRASQGVTVAQAQLAMRRSEQRIA 120

Query: 121 QALVVQRESELEAAQRRLIRSETLVQEGASSIQEVDDDRTRVRTTQAALTAATAQTKAAS 180
           QAL VQR   L AA RR+ RS+ L +  A + QEVDD+   +   +A L AA AQ + A 
Sbjct: 121 QALTVQRHKSLSAATRRVERSQPLGRMQALTAQEVDDEENTLAEARAQLDAAQAQEEGAR 180

Query: 181 AAISAARTQVSGASATVTAMAATVSRIEADINDSALTAPRSGRVQYRVAQPGEVLGSGGK 240
           AAI AA   V+ A A + A  A  +RIEAD+ +SA+ APR G +QYR+AQ GEV+  G K
Sbjct: 181 AAIRAAEADVASARALLEAAQAATARIEADLEESAIRAPRDGHIQYRLAQAGEVVSEGSK 240

Query: 241 VLNLVDLSDVYMTFFVPEAVAGKLAIGSDVRLILDAAPKYVIPAKVSYVASTAQFTPKTV 300
           +LNL+DLSD++M FF+P  +AGK+ +G +VR++LDAAP   +PA+++YV+  AQFTPK V
Sbjct: 241 LLNLIDLSDLHMHFFLPAELAGKVRLGQEVRVVLDAAPTDALPARITYVSRQAQFTPKAV 300

Query: 301 ETASERQKLMFRVKARI 317
           ETA+ERQKLMFRVKA++
Sbjct: 301 ETANERQKLMFRVKAQL 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,004,245
Number of extensions: 38804
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 5
Length of query: 388
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,207,925
Effective search space: 363585425
Effective search space used: 363585425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)