BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0185.0036.p (380 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311158|ref|YP_003775250.1| multidrug ABC transporter perme... 558 e-160 gi|300311268|ref|YP_003775360.1| multidrug ABC transporter perme... 405 e-114 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 85 1e-17 gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 84 2e-17 >gi|300311158|ref|YP_003775250.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 558 bits (1438), Expect = e-160, Method: Compositional matrix adjust. Identities = 292/373 (78%), Positives = 331/373 (88%) Query: 8 RSAANILRLGVKELWSLARDPTMLVLIVYTFSVSIYVAATAMPDSLHNAAIAIVDEDGSP 67 S ANI RLG+KELWSL RDP MLVLI YTFS+SIYVAATAMP+SLH+AAIAIVD D SP Sbjct: 3 NSWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDSSP 62 Query: 68 LSAQIAASFYPPYFKLPDMISSDQMDVGMDSGNYTFVLDIPPDFQRDVLAGRSPAMQLNV 127 LSA+IAASFYPP+FK+ ++++ Q D G+D G+YTFVLDIP DFQRDVLA R+PA+QLNV Sbjct: 63 LSARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQLNV 122 Query: 128 DATRMSQAFTGNAYILEIINAEVTEFLQRYRGLAASPVELVLHARFNPNLERAWFGALME 187 DATRMSQAFTGN+YI +++ EV +F+QR G A++PV L L RFNPNLE++WFG+LME Sbjct: 123 DATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSLME 182 Query: 188 IINNVTMLSIILTGAALIREREHGTIEHLLVMPVTPLEIMLAKVWSMGLVVLLAAAAALV 247 IINNVTMLSIILTGAALIREREHGTIEHLLVMPVTP EIMLAKVWSMG+VV LAA A+L+ Sbjct: 183 IINNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVWSMGVVVALAALASLL 242 Query: 248 FIVQGALRVPIQGSILLFLLVAALHLFATTSMGMFMAMLARSMPQFGMLLVLVLLPLQLL 307 IV+GAL VPI+GS+ LF+LV LHLFATTSMG+FMA LARSMPQFGML VLVLLPLQLL Sbjct: 243 LIVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQLL 302 Query: 308 SGGSTPRESMPVLVQDLMLAAPTTHFVSAGQAILYRGAGLSVIWPQMLAIVGIGAVLFFA 367 SGGSTPRESMPVLVQD+MLAAPTTHFV+AGQAILYRGAGL VIWPQ+LAI GIGAVLF A Sbjct: 303 SGGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLFMA 362 Query: 368 SLTRFRKTLGQMA 380 +L RFRKT+ QMA Sbjct: 363 ALGRFRKTISQMA 375 >gi|300311268|ref|YP_003775360.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 405 bits (1040), Expect = e-114, Method: Compositional matrix adjust. Identities = 214/369 (57%), Positives = 278/369 (75%) Query: 11 ANILRLGVKELWSLARDPTMLVLIVYTFSVSIYVAATAMPDSLHNAAIAIVDEDGSPLSA 70 AN+ +L +KELWSL RD ML LIV +F+ +Y AA+A+PD+L +AAIAIVDED SPLS Sbjct: 6 ANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASAIPDTLSHAAIAIVDEDDSPLSQ 65 Query: 71 QIAASFYPPYFKLPDMISSDQMDVGMDSGNYTFVLDIPPDFQRDVLAGRSPAMQLNVDAT 130 ++AA+F P F P IS +MD G+D+G Y FVL P Q + G+ +QLNVDAT Sbjct: 66 RLAAAFMAPQFSPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQLNVDAT 125 Query: 131 RMSQAFTGNAYILEIINAEVTEFLQRYRGLAASPVELVLHARFNPNLERAWFGALMEIIN 190 RM QA++G+AY+ +I+ E+ FLQ+ + L L ARFNP LE+ WF ++++II+ Sbjct: 126 RMDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAATLALRARFNPALEKTWFSSVLQIID 185 Query: 191 NVTMLSIILTGAALIREREHGTIEHLLVMPVTPLEIMLAKVWSMGLVVLLAAAAALVFIV 250 N+TML+IIL GAALIREREHGTIEHLLVMPV+P++IM AKV +MG VVL+AA +L +V Sbjct: 186 NITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATLSLHGVV 245 Query: 251 QGALRVPIQGSILLFLLVAALHLFATTSMGMFMAMLARSMPQFGMLLVLVLLPLQLLSGG 310 +G L VPI+GS+ LFL AAL LFA T++G+ +A +ARSMPQFG+LL+LVLLPL LLSGG Sbjct: 246 RGLLDVPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFGLLLMLVLLPLILLSGG 305 Query: 311 STPRESMPVLVQDLMLAAPTTHFVSAGQAILYRGAGLSVIWPQMLAIVGIGAVLFFASLT 370 +TPRESMPVL+Q LMLAAP+TH V G+ +LYRGAGL ++WPQ+LA+ IG +L + SL Sbjct: 306 ATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLEMVWPQLLALFLIGNILLWVSLR 365 Query: 371 RFRKTLGQM 379 R R L QM Sbjct: 366 RLRTMLTQM 374 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 92/344 (26%), Positives = 157/344 (45%), Gaps = 21/344 (6%) Query: 19 KELWSLARDPTMLVLIVYTFSVSIYVAATAMPDSLHNAAIAIVDEDGSPLSAQIAASFY- 77 +E L RDP + + + ++V + ++ A++D+D S S AA+ Sbjct: 552 REALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSSASRDYAAALRA 611 Query: 78 PPYFK-LPDMISSDQMDVGMDSGNYTFVLDIPPDFQRDVLAGRSPAMQLNVDATRMSQAF 136 PYF+ + Q+D M +G T ++IP F R + AGR + ++ S+A Sbjct: 612 SPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGAWINGAMPSRAE 671 Query: 137 TGNAYILEIINAEVTEFLQRYRGLAASP-VELVLHARFNPNLERAWFGALMEIINNVTML 195 T AY+ + + + QR +G +P +E+ R+N +L R+ L +I + + Sbjct: 672 TVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADL-RSLPAILPAVIPLLLLT 730 Query: 196 SIILTGA-ALIREREHGTIEHLLVMPVTPLEIMLAK---VWSMGLVVLLAAAAALVFIVQ 251 + A A++RE+E G I + V PVT LE + K ++G+ L + A V + Sbjct: 731 LPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFNFLLMSMAAVTL-- 788 Query: 252 GALRVPIQGSILLFLLVAALHLFATTSMGMFMAMLARSM--PQFGMLLVLVLLPLQLLSG 309 L +P++GS L ++L T MG+ + L RS F LL L+P +G Sbjct: 789 --LELPVKGSYAALALATLVYLVIATGMGLVASALTRSQIAAMFAALLG-TLVPATQFAG 845 Query: 310 GSTP---RESMPVLVQDLMLAAPTTHFVSAGQAILYRGAGLSVI 350 +TP E M LV D+ P TH + + + GL+ + Sbjct: 846 MTTPVSALEGMGRLVGDIH---PATHMFLISRGVYVKALGLADV 886 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 167/364 (45%), Gaps = 24/364 (6%) Query: 19 KELWSLARDPTMLVLIVYTFSVSIYVAATAMPDSLHNAAIAIVDEDGSPLSAQIA----A 74 +E L RDP L + ++ +++ + + N + A++D D + LS A Sbjct: 562 RESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLSYAVLDRDQTGLSQNYALNLSG 621 Query: 75 SFYPPYFKLPDMISSDQMDVGMDSGNYTFVLDIPPDFQRDVLAGRSPAMQLNVDATRMSQ 134 S Y + + P + ++D M SG+ + ++IPP F RD+ G + + VD ++ Sbjct: 622 SRY--FIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDIARGHTVEVGAWVDGAMPTR 679 Query: 135 AFTGNAYILEIINAEVTEFLQRYRGLA-ASPVELVLHARFNPNLER--AWFGALMEIINN 191 A T Y+ + + + G + A P + R+NP+++ A A++ ++ Sbjct: 680 AETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYNPDVKSLPAMVPAIIPLL-- 737 Query: 192 VTMLSIILTGAALIREREHGTIEHLLVMPVTPLEIMLAKVWSMGLVVLLAAAAALVFIVQ 251 + M+ +LT +++RE+E G+I +L V PV+ E +L K L+ +L A L + Sbjct: 738 LMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPYLLLGML-NFAMLTLLAV 796 Query: 252 GALRVPIQGSILLFLLVAALHLFATTSMGMFMAMLARSMPQFGMLLVL---VLLPLQLLS 308 VP++GS+L L A + + +T G+ + S Q L V ++P + Sbjct: 797 TVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNS--QIAALFVTMIGTIIPCVQFA 854 Query: 309 GGSTPRESMPVLVQDLMLAAPTTHFVSAGQAILYRGAGL----SVIWPQMLA---IVGIG 361 G P S+ + + P THF++ + + + L S WP ++A I+G+ Sbjct: 855 GLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSFWPLVVAAPVILGLS 914 Query: 362 AVLF 365 +L Sbjct: 915 VLLL 918 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,052,204 Number of extensions: 40339 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 4 Length of query: 380 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 293 Effective length of database: 1,207,925 Effective search space: 353922025 Effective search space used: 353922025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)