BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0034.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309606|ref|YP_003773698.1| acetate kinase [Herbaspirillum ...   251   7e-68

>gi|300309606|ref|YP_003773698.1| acetate kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 397

 Score =  251 bits (640), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 144/313 (46%), Positives = 192/313 (61%), Gaps = 6/313 (1%)

Query: 13  NNRLVAVAHRVVHGGAKYSAPVQVDHQVLADLRSYIPLAPLHQPFALDAIESLLHAQPGL 72
              L AV HRVVHGG   +  V++D  +  +L +  PLAPLHQP  L  I ++   +PGL
Sbjct: 82  QGELCAVGHRVVHGGLHLAQAVRLDDAIETELENLAPLAPLHQPQNLRLIRAIARLRPGL 141

Query: 73  TQIVCFDTAFHHTLPRVEKMLPIPYPAWERGVQRYGFHGLSYEYMSVVLPERYGDLARGN 132
            Q   FDTAFH +   + +   +P    E GV RYGFHG+SY Y++  +  +    A   
Sbjct: 142 PQTASFDTAFHASQDALARRFALPRRLHEEGVLRYGFHGISYSYVAAEMRRQALPEAHAR 201

Query: 133 TIVAHLGSGASLCAMRGLRSMATTMGFSALDGLMMGTRCGSLDPGVLLYMMETEELSPQQ 192
            +VAHLG+GASLCA+   RS+  + GFS LDG+ MGTRCG+LD GVLLY++  + +S  +
Sbjct: 202 VVVAHLGNGASLCALHAGRSVDASTGFSTLDGVPMGTRCGALDAGVLLYLLR-QGMSLDE 260

Query: 193 LGHVLYHESGLYGVSGISADPRALIAVEHDNPRAFDALALYVRRIVREIGALAAVLGGLD 252
           L  +LYH SGL GVSG+SAD R+L   +  +  A +AL L+  R   E   LA+ LGG+D
Sbjct: 261 LEDLLYHRSGLLGVSGLSADVRSL--QQSQDSAAREALDLFALRCAGEAARLASTLGGID 318

Query: 253 MLVFTAGIGEHNDELRRRICDALQFLGLTLHDQANRTNQGHAALISSSRSRVAVAVEPTN 312
            LVFTAGIGEH+  +R  IC+ L +LG+ L  QA   N  HA  IS + S V+V V PTN
Sbjct: 319 ALVFTAGIGEHDAAMRAAICERLGWLGVRLDPQA---NAAHAGRISRADSAVSVYVIPTN 375

Query: 313 EEWMAASLSQPLL 325
           EE + A  +  LL
Sbjct: 376 EEQVIADDAAALL 388


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,026,563
Number of extensions: 43368
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)