BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0185.0030.p (163 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 194 3e-51 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 166 1e-42 gi|300310680|ref|YP_003774772.1| 3-oxoacyl-[acyl-carrier-protein... 125 1e-30 gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 124 5e-30 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 117 5e-28 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 194 bits (493), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 94/162 (58%), Positives = 120/162 (74%) Query: 1 VLINNAGITRDAVLHRMSPEQWGDVIGTNLGSVFNMSRNVIEGMRERGFGRIVNISSVNG 60 VL+NNAGITRD +MS + W VI TNL S+FN+++ VIEGM ERGFGRI+NISSVNG Sbjct: 84 VLVNNAGITRDGQFRKMSKDDWDAVIDTNLNSLFNVTKQVIEGMCERGFGRIINISSVNG 143 Query: 61 ERGQIGQANYAAAKAGILGFTKSLAQESARKNITVNAIAPGYCDTDMVAAVPKDVLEKIV 120 ++GQ GQ NY+ AKAGI GFT +LAQE A K +TVN ++PGY TDMV A+ +VLEKIV Sbjct: 144 QKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSPGYIGTDMVRAIRPEVLEKIV 203 Query: 121 ATIPVGRLGNGGDIARLVVFLADDAAGFITGATLDINGGQFM 162 + IPV RLG +IA +V ++A G+ TG+ +NGG +M Sbjct: 204 SGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSLNGGLYM 245 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 166 bits (419), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 83/162 (51%), Positives = 111/162 (68%) Query: 1 VLINNAGITRDAVLHRMSPEQWGDVIGTNLGSVFNMSRNVIEGMRERGFGRIVNISSVNG 60 +L+NNAGIT+D + RM E+W VI TNL +V +SR V+ GM + GRI+NI+SV G Sbjct: 89 ILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVLRGMMKARTGRIINITSVVG 148 Query: 61 ERGQIGQANYAAAKAGILGFTKSLAQESARKNITVNAIAPGYCDTDMVAAVPKDVLEKIV 120 E G GQ NYAAAKAG+ G +++LA+E +NITVN +APG+ DTDM A+ + I+ Sbjct: 149 EAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGFIDTDMTRALNEQQSAAIL 208 Query: 121 ATIPVGRLGNGGDIARLVVFLADDAAGFITGATLDINGGQFM 162 IP+GRLG +IA V FLA A +ITG TL++NGG +M Sbjct: 209 QQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGMYM 250 >gi|300310680|ref|YP_003774772.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 247 Score = 125 bits (315), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/164 (45%), Positives = 98/164 (59%), Gaps = 2/164 (1%) Query: 1 VLINNAGITRDAVLHRMSPEQWGDVIGTNLGSVFNMSRNVIEGMRERGFGRIVNISSVNG 60 VL+NNAG +R A L ++PE+W +V N+ F + + +RG+GRI+NI+S+ G Sbjct: 83 VLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQVFGKRFADRGYGRIINIASLAG 142 Query: 61 ERGQIGQ-ANYAAAKAGILGFTKSLAQESARKNITVNAIAPGYCDTDMV-AAVPKDVLEK 118 + G A+YAAAK +L TK A+E A +TVNAI+PG D +V VP D L Sbjct: 143 QNGGTATGAHYAAAKGAVLTLTKVFARELAGAGVTVNAISPGPLDLPIVREIVPADKLAA 202 Query: 119 IVATIPVGRLGNGGDIARLVVFLADDAAGFITGATLDINGGQFM 162 +ATIPV LG IA V+ LA AG TGA LDINGG +M Sbjct: 203 TIATIPVKALGEPDFIADAVLLLASPEAGSATGACLDINGGLYM 246 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 124 bits (310), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 4/159 (2%) Query: 2 LINNAGITRDAVLHRMSPEQWGDVIGTNLGSVFNMSRNVIEGM-RERGFGRIVNISSVNG 60 ++ NAGITRD M E W V+ TNL +N+ ++ M R R GRIV ++SV+G Sbjct: 88 VVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMPMVRRRAAGRIVTLASVSG 147 Query: 61 ERGQIGQANYAAAKAGILGFTKSLAQESARKNITVNAIAPGYCDTDMVAAVPKDVLEKIV 120 G GQ NY+AAKAG++G TK+LA E A+++ITVN +APG DTDM P D +I+ Sbjct: 148 LIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGLIDTDMTEDAPID---EIL 204 Query: 121 ATIPVGRLGNGGDIARLVVFLADDAAGFITGATLDINGG 159 IP R G ++A V FL A +IT + +NGG Sbjct: 205 KLIPARRAGKPEEVAAAVAFLMSPDAAYITRQVISVNGG 243 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 117 bits (293), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 11/169 (6%) Query: 1 VLINNAGITRDAVLHRMSPEQWGDVIGTNLGSVFNMSRNVIEGMRERGFGRIVNISSVNG 60 +L+NNAG+T+ A L ++ + + ++ +L MS+ V+ M+ + G IV ISSV+ Sbjct: 84 ILVNNAGVTQPAKLLEITGKDYDRILDVSLRGTLYMSQAVLPAMQAQQSGSIVCISSVSA 143 Query: 61 ERGQ--IGQANYAAAKAGILGFTKSLAQESARKNITVNAIAPGYCDTDMVAAVPKDVLE- 117 +RG +G +Y+AAKAG+LG +++A+E + I VN I PG TD + KD+L Sbjct: 144 QRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRVNCITPGLISTD----INKDILSA 199 Query: 118 ----KIVATIPVGRLGNGGDIARLVVFLADDAAGFITGATLDINGGQFM 162 +I TIP+GRLG D+ + VFLA D + + TG TLD+NGG + Sbjct: 200 EKKAEIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGVTLDVNGGMLI 248 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 522,567 Number of extensions: 21759 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 40 Length of query: 163 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 85 Effective length of database: 1,250,540 Effective search space: 106295900 Effective search space used: 106295900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)