BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0029.p
         (274 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311803|ref|YP_003775895.1| universal stress protein [Herba...   352   2e-98

>gi|300311803|ref|YP_003775895.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  352 bits (904), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/274 (62%), Positives = 224/274 (81%)

Query: 1   MSYKTILVYIDQSSHCAGRIKIAAEIAIAHDAHLVGVAVTGISRFIYPDGMVFVTSVIDG 60
           MSYK+ILV++DQS H A RI+IAAE+A A  AHL+G +V+GIS FI  +G  ++ + +DG
Sbjct: 1   MSYKSILVHVDQSRHAAQRIRIAAELARAQQAHLIGSSVSGISSFITMEGAAYIAAQMDG 60

Query: 61  LRERAQRSLDRFEETVKRIGVNSYESRISEDDAQGALAQQARYSDLIVVSQIDLNERDGA 120
            R+RA  +L+ F++    +GV S E R  +DDA+G LA QARY+DL+VVSQ DL++ D +
Sbjct: 61  FRDRALAALENFDKIANSVGVPSCEKRFVDDDAEGGLALQARYADLVVVSQADLDDADDS 120

Query: 121 DISDLPEYVMLNSSRPVLTIPYAGTFENVGRNALIAWDGSMEATHAITNAMPMLKKAHNV 180
            ++DLPEYVMLNS RPVL IP AG F++VG+NAL+AWDGSME+T A+T A+P+L++A NV
Sbjct: 121 FLTDLPEYVMLNSPRPVLIIPSAGEFKHVGKNALVAWDGSMESTRAVTAALPLLRQADNV 180

Query: 181 TIALFNAARQFDVHGEQPGADIALYLARHGVKIDVVEERTEIDVGNALLSLAADKGADLL 240
           T+ +FN+ ++   HGEQPGADIALYLARHGV ++V +E+T +D+GNALLSLAADKG+DLL
Sbjct: 181 TVVIFNSDKRLGTHGEQPGADIALYLARHGVTVEVAQEQTPLDIGNALLSLAADKGSDLL 240

Query: 241 VMGGYGHSRFQEVLLGGVTSTILDTMTLPVLMSH 274
           VMGGYGH+RF+EVLLGGVT TIL TMTLPVLM+H
Sbjct: 241 VMGGYGHTRFREVLLGGVTLTILKTMTLPVLMAH 274


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 782,019
Number of extensions: 31672
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,222,130
Effective search space: 232204700
Effective search space used: 232204700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)