BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0024.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311833|ref|YP_003775925.1| hypothetical protein Hsero_2518...   661   0.0  

>gi|300311833|ref|YP_003775925.1| hypothetical protein Hsero_2518
           [Herbaspirillum seropedicae SmR1]
          Length = 440

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/375 (82%), Positives = 339/375 (90%)

Query: 1   MMEQMIAAYGNTSRSYKSGKKPYAVFDWDNTSIMNDCEEALLMHQINTLSFKLTPAEFSA 60
           M+ QMIA +G  +  Y+S K+PYAVFDWDNTSIMNDCEEALLMHQINTLSFKLTPAEFSA
Sbjct: 63  MVAQMIAEHGKLAAGYQSSKRPYAVFDWDNTSIMNDCEEALLMHQINTLSFKLTPAEFSA 122

Query: 61  IIRQNVPPGPFTADFKNAAGKVVDLDSICADLDADYAFLHANYKGFTGGKSLEEISATSE 120
           I RQNVPPGPF+ DFKNAAG+VVDL++ICADLDADYAFL+ANYKG  G KSLEE+SAT E
Sbjct: 123 ITRQNVPPGPFSKDFKNAAGEVVDLEAICADLDADYAFLYANYKGMAGSKSLEEVSATPE 182

Query: 121 FLDFRAKLYYLYEAVNDTHGVNVGYPWVIYFFANMTVAEVSALAEASNDAALGAALSKVK 180
           F DFRAKLYYLYEAVNDTHGV VGYPWVIYFFANM+VAEVSALAEASNDAALGAAL+KVK
Sbjct: 183 FQDFRAKLYYLYEAVNDTHGVAVGYPWVIYFFANMSVAEVSALAEASNDAALGAALTKVK 242

Query: 181 YTSPADRPGKAGVVSVGHFHGIRLCTEIGGMMDTFRDHGIDIYVCTASLEDVVAVFATNP 240
           YTSPA RPG+AGVVSV HFHGIRLCTEI  +MD  R +GID+YVCTASLE+VVAVFAT+P
Sbjct: 243 YTSPAQRPGRAGVVSVSHFHGIRLCTEIATLMDALRRNGIDVYVCTASLEEVVAVFATHP 302

Query: 241 KYGYNVARENIIGLRLERDGSNYKNAYLKNWPLTWGPGKTVAIKSELVAAKGYGPIFVAG 300
           KYGY+V+R+NIIGLRLER+G   +NAYLK+WPLTWGPGKTVAI+  LVA KGYGP+FVAG
Sbjct: 303 KYGYHVSRDNIIGLRLERNGQVLRNAYLKDWPLTWGPGKTVAIRQVLVAQKGYGPLFVAG 362

Query: 301 DSDGDYDMLRDFADTRYGLIVNRMKNGKIGELSKLAAAQISASQPRFLLQGRQESTGNWL 360
           DSDGDYDMLRDF +TRYG IVNRMKNGKIGELSKLAA QI+A +PRFLLQGRQESTGNWL
Sbjct: 363 DSDGDYDMLRDFPETRYGFIVNRMKNGKIGELSKLAAEQINAGRPRFLLQGRQESTGNWL 422

Query: 361 PVETSIKYGKTTPSL 375
           P E SIKYGKT P L
Sbjct: 423 PAEASIKYGKTAPQL 437


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,203,693
Number of extensions: 49114
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)