BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0023.p
         (439 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311834|ref|YP_003775926.1| amino acid transporter permease...   791   0.0  

>gi|300311834|ref|YP_003775926.1| amino acid transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/432 (92%), Positives = 413/432 (95%)

Query: 1   MDLATSSRHAGLKPVLSTLQLWGIAVGLVISGEYFGWSYGWASAGTLGFTVTALFIAAMY 60
           M+ ++S +   LKPVLSTLQLW IAVGLVISGEYFGWSYGWASAGTLGFTVTALFIAAMY
Sbjct: 1   MNASSSGQGHTLKPVLSTLQLWAIAVGLVISGEYFGWSYGWASAGTLGFTVTALFIAAMY 60

Query: 61  TTFIFSFTELTTSIPHAGGPFAYSKRAFGPTGGYLAGAATLIEFVFAPPAIALAIGAYLN 120
            TFIFSFTELTTSIPHAGGPFAYSKRAFGP GGYLAGAATLIEFVFAPPAIALAIGAYLN
Sbjct: 61  ATFIFSFTELTTSIPHAGGPFAYSKRAFGPVGGYLAGAATLIEFVFAPPAIALAIGAYLN 120

Query: 121 VQFPTVDPKLAALGAYLVFMTLNIVGVQIAATFELCVTLLAIFELLVFMGVVSPGFSLAN 180
           VQFP +DPKLAALGAYLVFMTLNIVGVQIAATFEL VTLLAIFELLVFMGVV+PGFSLAN
Sbjct: 121 VQFPNIDPKLAALGAYLVFMTLNIVGVQIAATFELFVTLLAIFELLVFMGVVAPGFSLAN 180

Query: 181 FTKGGWSGSDSFSLASIPGMFAAIPFAIWFFLAIEGVAMAAEEAKDPRRSIPIAYITGIL 240
           FTKGGWSGSD FSLA++PGMFAAIPFAIWFFLAIEGVAMAAEEAKDPRRSIPIAYITGIL
Sbjct: 181 FTKGGWSGSDGFSLAAVPGMFAAIPFAIWFFLAIEGVAMAAEEAKDPRRSIPIAYITGIL 240

Query: 241 TLVVLAIGVMLFAGGAGDWSKLSNINDPLPQAMKLIVGANSNWLHMLVWLGLFGLVASFH 300
           TLVVLAIGVMLFAGGAGDW+KL+NINDPLPQAMKLIVG NSNWLHMLVWLGLFGLVASFH
Sbjct: 241 TLVVLAIGVMLFAGGAGDWTKLANINDPLPQAMKLIVGDNSNWLHMLVWLGLFGLVASFH 300

Query: 301 GIILGYSRQIFALSREAYLPAYFAKVHPRFKTPHRAILAGGAVGIAAIYSDELITIGGQT 360
           GIILGYSRQIFAL+RE YLPAYFA+VHPRFKTPHRAILAGG VGIAAIYSDELI IGGQT
Sbjct: 301 GIILGYSRQIFALAREGYLPAYFARVHPRFKTPHRAILAGGVVGIAAIYSDELIKIGGQT 360

Query: 361 LTANIVTMSVFGAILMYILSMLSLFKLRRSEAGLTRPFRAPLYPIFPAFALFGALVCMAT 420
           LTANIVTMSVFGAILMYILSMLSLF+LRR+EAGL RPFRAPLYP FPAFALFGALVCMAT
Sbjct: 361 LTANIVTMSVFGAILMYILSMLSLFRLRRAEAGLERPFRAPLYPYFPAFALFGALVCMAT 420

Query: 421 MIYYNLLIFEIF 432
           MIYYN LIF IF
Sbjct: 421 MIYYNPLIFGIF 432


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,349,230
Number of extensions: 57455
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 3
Length of query: 439
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,203,190
Effective search space: 422319690
Effective search space used: 422319690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)