BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0022.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon...   116   9e-28

>gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 332

 Score =  116 bits (290), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 1   MIMTQPGHREFELMTPDDHAILGIVIQRNTLLAAADRLGCRIEWSRLASAELLHVGQVAL 60
           ++MT+PG  EFEL+TPD H I GIV+QR+ L A+A RLGC+ +W RL  AELL V    L
Sbjct: 106 VVMTRPGACEFELVTPDAHEIYGIVVQRDALQASAARLGCQPDWQRLGQAELLKVDHGGL 165

Query: 61  DTCAQHIQTLLDPAT-PHGAHA---MQQDQVVTTLLAMLDASEVESEACTSLLRRRKIVS 116
           + C Q I  LL  A    GAHA   ++Q+ V+  LLAMLD  E+E+EA  S LRRR+IV+
Sbjct: 166 EDCRQQIAALLAMAGQASGAHAALQLRQEAVLVALLAMLDEGEIEAEAGASFLRRRRIVN 225


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.130    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 388,191
Number of extensions: 12840
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)