BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0021.p
         (95 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon...    82   6e-18
gi|300312820|ref|YP_003776912.1| AraC family transcription regul...    57   2e-10
gi|300310610|ref|YP_003774702.1| AraC family transcription regul...    54   3e-09

>gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 332

 Score = 82.4 bits (202), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1   MLCEQLHVSRRTLQYCFEDVMGISPMTYLRSLRLNGVRRQLMQG 44
           MLCE +HVSRRTLQYCFEDV+G+SPM+YLRSLRLNGVRR L  G
Sbjct: 243 MLCEAVHVSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHG 286


>gi|300312820|ref|YP_003776912.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 331

 Score = 57.4 bits (137), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 2   LCEQLHVSRRTLQYCFEDVMGISPMTYLRSLRLNGVRRQL 41
           +C   HVSRRTLQYCFE+ + ISP+ YL++LRLN   R++
Sbjct: 238 VCRATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREI 277


>gi|300310610|ref|YP_003774702.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score = 53.9 bits (128), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 32/45 (71%)

Query: 2   LCEQLHVSRRTLQYCFEDVMGISPMTYLRSLRLNGVRRQLMQGAA 46
           +CEQ+ VSRRT+Q  F+ V   +P  YLR +RLNGVRR LM  +A
Sbjct: 232 VCEQMQVSRRTVQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSA 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 257,122
Number of extensions: 7461
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 3
Length of query: 95
Length of database: 1,619,870
Length adjustment: 64
Effective length of query: 31
Effective length of database: 1,316,830
Effective search space: 40821730
Effective search space used: 40821730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)