BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0015.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311788|ref|YP_003775880.1| methyl-accepting chemotaxis pro...   194   3e-51

>gi|300311788|ref|YP_003775880.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  194 bits (494), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/167 (57%), Positives = 124/167 (74%)

Query: 1   MLNQILFVVLGALLSGVPLALLLRRQKMRMRRMVDVDQVDALKRNVQLTLDEHQANIDAH 60
           M+N IL V LGA+L+G+PLALL  RQ+ R +R++D  Q++ +++  Q  L   +  + AH
Sbjct: 1   MVNAILLVALGAVLAGLPLALLWLRQQRRAQRLIDAGQLELVRQQAQEALARQEQQMQAH 60

Query: 61  RQELEAQRRDNDVRLEQTRRDTEKVVAQLSSQNSRSIARVLVNCDASQETIVNLLGLMRT 120
            Q+   +R+     LE+ R ++E ++ QL SQ S + +RV  NCDASQ+TI  LLGL+RT
Sbjct: 61  EQQARQERQSAQQLLEEMRLESETMIGQLQSQQSDNFSRVKENCDASQDTIAKLLGLVRT 120

Query: 121 FERWHDDMNVLITHNREMHRKNDEFALIVNQVIIVALNASIEAARAG 167
           FERWHDDMNVLI HNR+MHR NDEFALIVNQVIIVALNASIEAARAG
Sbjct: 121 FERWHDDMNVLIAHNRDMHRMNDEFALIVNQVIIVALNASIEAARAG 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,954
Number of extensions: 13181
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)