BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0014.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311789|ref|YP_003775881.1| chemotaxis histidine kinase [He...   335   2e-93

>gi|300311789|ref|YP_003775881.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 808

 Score =  335 bits (859), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/229 (72%), Positives = 192/229 (83%), Gaps = 4/229 (1%)

Query: 1   MHTIKGNGRTYGLLHLSNVVHDVEEHYDDLRHPETGAVWDQERLLQDLARVRVAIDRYAR 60
           MHTIKGNGRTYGLLHL+NVVH  E+HYDDLRHP +GAVW QE LL+ LA+VR  IDRYAR
Sbjct: 458 MHTIKGNGRTYGLLHLANVVHHTEQHYDDLRHPASGAVWRQEELLRQLAQVREIIDRYAR 517

Query: 61  INEVTLGR--QAAPEQA-AAVERHILTIDRKHIQESLHRLETVNTSNLHELVAVRNAVRK 117
           IN+VTLGR   AA EQ      RH++TIDRKHI++SL RLE VNT+NLHELVAVRN VR+
Sbjct: 518 INDVTLGRGVAAAGEQTLPGYARHVITIDRKHIEQSLERLENVNTANLHELVAVRNDVRR 577

Query: 118 TLRLLGTEPVADVLASVTDSLPALAR-LGKAAPAVVIEDNGYVIHTHASSLLKNVFMHLI 176
           TLRLLGTE + +VLA VTDSLPALA  LGKAAP V IEDNGYV+H+ A+ LL+NVFMHLI
Sbjct: 578 TLRLLGTETIQEVLAPVTDSLPALAADLGKAAPVVQIEDNGYVVHSFAAPLLQNVFMHLI 637

Query: 177 RNAMDHGLETPDERQAKGKNETGTIRLQLGVMDNMLHMALSDDGRGLAL 225
           RNAMDHGLE+ +ER AKGK E G I+L++GVM++M  MALSDDGRGLAL
Sbjct: 638 RNAMDHGLESSEERLAKGKPEAGVIKLEMGVMEDMFQMALSDDGRGLAL 686


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 809,469
Number of extensions: 33110
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)