BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0013.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311789|ref|YP_003775881.1| chemotaxis histidine kinase [He...   317   4e-88

>gi|300311789|ref|YP_003775881.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 808

 Score =  317 bits (812), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 150/170 (88%), Positives = 158/170 (92%)

Query: 12  YRQITGPISRMQTMMTEIASSQDFTRRLPVDRMDEVGHSIVAFNGMVEKIEEASALVKQK 71
           YRQITGPISRM  MM EIA+SQDFTRRLPV RMDEVGHSIVAFNGMVEKIEEASA V+QK
Sbjct: 206 YRQITGPISRMAAMMGEIATSQDFTRRLPVQRMDEVGHSIVAFNGMVEKIEEASAQVRQK 265

Query: 72  TADMQAMLQNIPQGILTVVDGNKVHPEYSAFLETVFETTDIAGRDLMGLVFAGTSLGADT 131
           TADMQAMLQNIPQGILT+V+GN++HPEYSAFLETVFETTDIAGRD+M LVFA T LGADT
Sbjct: 266 TADMQAMLQNIPQGILTIVEGNRIHPEYSAFLETVFETTDIAGRDVMELVFADTQLGADT 325

Query: 132 LSQIEAIGGACIGEDVMNFEFNEHLMVGEVEKKMADGRVKILDLSWSPIT 181
           LSQIEAIGGACIGEDVMNFEFN HLMVGE+EK MADG  KILDLSWSPIT
Sbjct: 326 LSQIEAIGGACIGEDVMNFEFNAHLMVGEIEKTMADGSKKILDLSWSPIT 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 538,013
Number of extensions: 20774
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)