BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0010.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469...   276   1e-75
gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823...    61   8e-11

>gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  276 bits (706), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/292 (51%), Positives = 187/292 (64%), Gaps = 67/292 (22%)

Query: 6   QATARTFARTARHPGPPDPVRIVSLAG--------------------------------- 32
           QA  R F+RT RHPG PDP RIVSLAG                                 
Sbjct: 2   QAAPR-FSRTVRHPGAPDPQRIVSLAGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTV 60

Query: 33  --------------PAMAVTI----------ALEAGRNLRDAIA----XGGAPFVHCHAI 64
                         PA+AV            A+E G  +  A A      G PFVHCHA+
Sbjct: 61  RFGQLAIAELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRKDGEPFVHCHAV 120

Query: 65  WTDEQGHRRGGHMLMDQSIVAETAPAQAWGVHNATMETRFDPETNFTLFHPAVVAAETVD 124
           W D QG R+GGH++M++++V    PAQAWG+H+ATM TR+DPETNFTLF+P  +A +TV 
Sbjct: 121 WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLAEQTVT 180

Query: 125 G-GRRILLARIRPDEDLTMAIEEVCRTHGIRNAVVRGSVGSIIGAEFEDGRVIEDRATEI 183
             G+R++LARIRPD+DLTMA+E  C  HG+ NA+VRGSVGSIIGAEF+DGRV+EDRATEI
Sbjct: 181 STGKRVVLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDGRVLEDRATEI 240

Query: 184 LVRSGRVSRGHDGVRAQLDIALIDPRGHVCEGVLARGCNPVLICFELVLEEI 235
           L+R+G V +G    RA+L+I LI+P+G VCEGVLARGCNPVLICFELVL+E+
Sbjct: 241 LIRAGEVRQG----RARLEIGLINPQGQVCEGVLARGCNPVLICFELVLQEL 288


>gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score = 60.8 bits (146), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 128 RILLARIRPDEDLTMAIEEVCRTHGIRNAVVRGSVGSIIGAEFEDGRV-------IEDRA 180
           ++++AR++P++DLT ++E +CR HG+  A+VRG++GS+I A  +           +    
Sbjct: 26  KLVMARLKPNQDLTESVEALCRQHGMDKAIVRGAIGSLIDAHLQYATPTGLREMEVNGPG 85

Query: 181 TEILVRSGRVSRGHDGVRAQ-LDIALIDPRGHVCEGVLARGCNPVLICFELVLEE 234
            EIL   G +        A  L   + D  G +  G   RG N   I  E+ L+E
Sbjct: 86  VEILNVFGEIGFADGPASAHPLQGVVADTEGRIFAGRFVRGANLSFITIEITLQE 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,579
Number of extensions: 33544
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 3
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)