BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0006.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311076|ref|YP_003775168.1| sugar kinase,ribokinase family ...   231   2e-62
gi|300310831|ref|YP_003774923.1| 2-ketogluconate kinase [Herbasp...    69   1e-13

>gi|300311076|ref|YP_003775168.1| sugar kinase,ribokinase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  231 bits (589), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/151 (80%), Positives = 134/151 (88%), Gaps = 1/151 (0%)

Query: 1   MAHARKNGTLTSLDTNLRLRLWPLERARVKMAEAFALCDICLPSWEDVSALTGLEDRDAI 60
           MAHAR +G  TSLDTNLRLRLWPLERAR +M EAF LCDICLPSWEDVS LTGLEDRDAI
Sbjct: 147 MAHARASGVTTSLDTNLRLRLWPLERARARMEEAFRLCDICLPSWEDVSLLTGLEDRDAI 206

Query: 61  VDKLLGYGVKLVAFKLGKEGCYVATAAERRMVAAYPVDAIDATGAGDCFGGAFIAQLVDG 120
           VD+LL YGVKLVAFKLGKEGCYVAT+ +RRMVA YPVD++DATGAGDCFGGAF+A+L+ G
Sbjct: 207 VDRLLSYGVKLVAFKLGKEGCYVATSDQRRMVAPYPVDSLDATGAGDCFGGAFMAELMAG 266

Query: 121 KDPFEAARYANVAAAISTTGYGAVXEPTASR 151
           +D F AARYANVAAA+STTGYGAV EP   R
Sbjct: 267 RDAFAAARYANVAAALSTTGYGAV-EPIPRR 296


>gi|300310831|ref|YP_003774923.1| 2-ketogluconate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 69.3 bits (168), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MAHARKNGTLTSLDTNLRLRLWPLERARVKMAEAFAL-CDICLPSWEDVSALTGLEDRDA 59
           M   R  G   S D NLR  LWP +    +   A A   D  LP   +   LTG +D   
Sbjct: 155 MDFMRGQGKTISFDPNLRPMLWPSQEVMAQQLNALAFKADWVLPGLSEGKILTGHDDARE 214

Query: 60  IVDKLLGYGVKLVAFKLGKEGCYVATAAERRMVAAYPV-DAIDATGAGDCFGGAFIAQLV 118
           I    L  GVKLV  KLG EG Y         VA  PV + +D  GAGD F    I+ ++
Sbjct: 215 IAGFYLERGVKLVVIKLGAEGAYWRNGQGEGRVAGVPVKEVVDTVGAGDGFAVGVISGML 274

Query: 119 DG 120
           +G
Sbjct: 275 EG 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 540,681
Number of extensions: 20998
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)