BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0005.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill...   231   3e-62
gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill...   170   5e-44

>gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  231 bits (588), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 129/166 (77%)

Query: 1   MTSSHYQCRAFVLPPLEGKSKEMLGISFYFLGRLQEAADVYRDWMEDEPGNPIAAHMYAA 60
           M +SHYQCRA+VLPPLEGKS EMLGISFYFLGRL EAA+ YR W+ +EP NPIAAHM AA
Sbjct: 171 MQASHYQCRAYVLPPLEGKSWEMLGISFYFLGRLPEAAEAYRAWLREEPDNPIAAHMLAA 230

Query: 61  CSQIEVPGRASDSYIEKHFDRYAETFNANLVGSLGYRGPQLMAQGLDIIAAAGKQYDVLD 120
           CSQ +VP RASD YIE HFDRYAETF ANL+ SLGYRGP+L+A+GL +IA    Q+  +D
Sbjct: 231 CSQADVPPRASDRYIESHFDRYAETFEANLLQSLGYRGPRLIAEGLALIAPPAHQFAAID 290

Query: 121 LGCGTGLCAPIVAAYARSLTGVDLSGKMLDQARARAKXARARVAAM 166
           +GCGTGLC   VA Y+  L GVDL+GKML++A A    AR   A +
Sbjct: 291 IGCGTGLCGGQVAPYSHHLVGVDLAGKMLEKAAATGHYARLEKAEI 336


>gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 439

 Score =  170 bits (431), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 1   MTSSHYQCRAFVLPPLEGKSKEMLGISFYFLGRLQEAADVYRDWMEDEPGNPIAAHMYAA 60
           M SS YQC AFVLPP EGKS+E+L ISFYFLGR+ EAA+V R W+++EPG+PIA HM+AA
Sbjct: 166 MQSSRYQCMAFVLPPHEGKSRELLAISFYFLGRVAEAAEVCRRWLQEEPGHPIANHMHAA 225

Query: 61  CSQIEVPGRASDSYIEKHFDRYAETFNANLVGSLGYRGPQLMAQGLDIIAAAGKQYDVLD 120
            + +       D YI + FD YA+ F++NLV  L YRGPQ++   L     A     VLD
Sbjct: 226 YAGLPSHTVPRD-YIVRRFDDYADHFDSNLVTHLDYRGPQVLNAVLQASLPANADMRVLD 284

Query: 121 LGCGTGLCAPIVAAYARSLTGVDLSGKMLDQA 152
            GCGTGLCAP++A YA SL GVDLS  ML  A
Sbjct: 285 AGCGTGLCAPVLAPYALSLEGVDLSSNMLRHA 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 513,451
Number of extensions: 21833
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)