BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0004.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill...   135   2e-33
gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill...    79   9e-17

>gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  135 bits (339), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 86/123 (69%)

Query: 16  LLQQAIGFHTSGDLPRAERIYREVLAQDPVHPIALHYLGIFLHQNGQHDEGVQSIRLSCA 75
           LL+QAI  H +G L +A  IY  VL  DP+HP+ALHY GI+LHQ+GQHDE +  + L+ A
Sbjct: 21  LLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASA 80

Query: 76  LQPDNAAWHNDLGNVLFALREFEEASEAYQASLDADPHDHVVWNNLGSSQLQHNDTEGAI 135
           L+PDNA WHND GNVLFAL++   A +AY  +L   P DH +WNNLG+  LQ +    AI
Sbjct: 81  LEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPDAI 140

Query: 136 ASF 138
           ++F
Sbjct: 141 SAF 143


>gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 439

 Score = 79.3 bits (194), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 67/111 (60%)

Query: 27  GDLPRAERIYREVLAQDPVHPIALHYLGIFLHQNGQHDEGVQSIRLSCALQPDNAAWHND 86
           G L  AE  YR  LA +  H    HYLG+ LHQ G+H+EGV  +R +    P +A W ND
Sbjct: 27  GRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQRGRHEEGVTLMRQAALAAPADADWCND 86

Query: 87  LGNVLFALREFEEASEAYQASLDADPHDHVVWNNLGSSQLQHNDTEGAIAS 137
           +GNVLFA   F+EA++AYQ +L   P D  +W NLG+++      + AIA+
Sbjct: 87  IGNVLFACSRFDEAAQAYQQALALRPDDAQLWTNLGATRRAQGQHQAAIAA 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 407,161
Number of extensions: 15443
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)