BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0003.p (502 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311074|ref|YP_003775166.1| transcription regulator protein... 740 0.0 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 318 9e-88 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 143 4e-35 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 125 1e-29 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 118 1e-27 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/470 (74%), Positives = 405/470 (86%), Gaps = 4/470 (0%) Query: 22 PIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPR 81 P+YRRLA+HY SAIQ+GTL GDRMPSVRDLMRQH VSLSTALQTLRH+EEGGWLEARPR Sbjct: 41 PLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPR 100 Query: 82 SGYFVRQPRRAAIRPVGEPNVLAPLDPAQYVGIHEQVSDFIARRQLQAPAIDLSGMSCAP 141 SGYFVRQPRR+AIRPV EP L +D Q+VGIHE+VS +IA RQ AP IDLSGM+CAP Sbjct: 101 SGYFVRQPRRSAIRPVQEPKSLLAIDAGQFVGIHERVSKYIALRQAGAPHIDLSGMTCAP 160 Query: 142 ELYAVEALKNAAIRALREQPSLLTSPMPINGNVTFRQVVARRALNAGIRIGADDVVVTHG 201 +LYAVE LK AA+RALRE+P LLTS MP NGN TFRQ VARRALNAG+RI ++VVVTHG Sbjct: 161 QLYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALNAGMRIDTEEVVVTHG 220 Query: 202 CIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPKRXPTSPQTGISIEAL 261 CIEALNLA+RAVA GDTIAVESPTYFGLLQ LE+LGM+ALEIP TSP TGIS+EAL Sbjct: 221 CIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIP----TSPHTGISVEAL 276 Query: 262 ELAIQTYGNIKAVVVVPTLQNPLGCIMPDSHKERLVALCERCAVPLIEDDAYSELADGDV 321 ELA++TYGNIKAVVVVP LQNPLGCIMP+ HK++LV LC++ +PLIEDDAY+ELADG V Sbjct: 277 ELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSV 336 Query: 322 APSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEEWTQIT 381 PS+ K DR+GNVIYCASLNKVLAPGMRLGWM G+WHERVKMLKF +TRANEEWTQ+T Sbjct: 337 TPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVT 396 Query: 382 AANYMGSPAYDRHLRRLRGNLKEQREQMAEAIAGYFPSETRLSVPDGGVGLWVELPRGLS 441 AA+++ SPAYDRHLRRLR LK+QRE+MAE+IA YFP TRL++P+GGVGLWVELP + Sbjct: 397 AADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLWVELPVQVC 456 Query: 442 SKAVFAAALDQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKL 491 S+ +F AL +G+GVSPG IFSNS R+ H++R+CCG PF ELDQALR+L Sbjct: 457 SQQLFERALAEGVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRL 506 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 318 bits (814), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 184/477 (38%), Positives = 277/477 (58%), Gaps = 21/477 (4%) Query: 22 PIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPR 81 P+Y++ A+ ++I+ G L PG+R+ SVR +QH VS++T ++ LE G +E++P+ Sbjct: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 Query: 82 SGYFVRQ----PRRAAIRPVGEPNVLAPLDPAQYVGIHEQVSDFIA---RRQLQAPAIDL 134 SGYFVR+ P + A+R + PA VS + + Q + L Sbjct: 65 SGYFVREQPEAPPKPALRTTSRED-----HPAWQESTEVDVSRLVLATLKTIQQDGTVPL 119 Query: 135 SGMSCAPELYAVEALKNAAIRALRE--QPSLLTSPMPINGNVTFRQVVARRALNAGIRIG 192 P L+ L A R R Q S+ P G+ + +ARR L G+++ Sbjct: 120 GSPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPP--GHPELLRQIARRYLENGLKVD 177 Query: 193 ADDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPKRXPTSP 252 +++V+T G EA+NL L+AVA+ GDTIAVE+PT++ +L +E LGMRALEIP T P Sbjct: 178 PEEIVITVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIP----TDP 233 Query: 253 QTGISIEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDSHKERLVALCERCAVPLIEDDA 312 Q GI + ALE ++T I A +V+P QNPLG MPDS KERLV L E+ +P+IE+ Sbjct: 234 QRGIDVGALEERMKTQA-IAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAV 292 Query: 313 YSELADGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTR 372 YSEL G+ PS+ K +DR G V++C+S +K L R+GW G++ +V+ LKF T Sbjct: 293 YSELYYGNAHPSSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTL 352 Query: 373 ANEEWTQITAANYMGSPAYDRHLRRLRGNLKEQREQMAEAIAGYFPSETRLSVPDGGVGL 432 A Q A Y+ Y+RHLRR+R +QR+ M + +FP+ T++S P GG L Sbjct: 353 ATPTAPQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVL 412 Query: 433 WVELPRGLSSKAVFAAALDQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALR 489 WVELP+G+ + ++ +L GI V+PG IF+ ++R+ H++RL ++ E +QAL+ Sbjct: 413 WVELPQGVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKETEQALK 469 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 143 bits (360), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 164/338 (48%), Gaps = 11/338 (3%) Query: 140 APELYAVEALKNAAIRALREQPSLLTSPMPINGNVTFRQVVARRALNAGIRIGADDVVVT 199 +P + VE +K A R L +Q + P +G + R+ +A G +I A+ V++ Sbjct: 46 SPLTFPVEHMKTAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLSTNGAQISAEQVLMV 105 Query: 200 HGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPKRXPTSPQTGISIE 259 G + L+L + + G + VE+P+Y G LQ G + +P S + G+ E Sbjct: 106 SGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVP-----SDEFGLQPE 160 Query: 260 ALELAIQTYGNIKAVVVVPTLQNPLGCIMPDSHKERLVALCERCAVPLIEDDAYSELADG 319 +E AI G + + +P QNP G +P + +LV C R +PLIEDD Y L+ Sbjct: 161 TIE-AIA--GGARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGALSYQ 217 Query: 320 DVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGK-WHERVKMLKFAYTRANEEWT 378 + AP + VIY S +KVL PG+RLG++ + + +++ K A + T Sbjct: 218 N-APLPKMLSMNPSGVIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLT 276 Query: 379 QITAANYMGSPAYDRHLRRLRGNLKEQREQMAEAIAGYFPSETRLSVPDGGVGLWVELPR 438 Q+ + D+H+ +R +Q + M +A+ YFP+ S P+GG+ +WV LP Sbjct: 277 QMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPE 336 Query: 439 GLSSKAVFAAALDQ-GIGVSPGVIFSNSDRFDHYLRLC 475 + + A+ A++Q + PG F + + LRL Sbjct: 337 HIDAGALLNEAVEQEKVAFVPGAPFYANVAQKNTLRLS 374 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 119/462 (25%), Positives = 196/462 (42%), Gaps = 27/462 (5%) Query: 35 IQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPRSGYFVRQPRRAAI 94 I++G L G+R+PSVR + H + ST ++ L G L+AR +G+FV A Sbjct: 33 IETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGAGFFVA----ARA 88 Query: 95 RPVGEPNVLAPLDPAQYVGIHEQVSDFIARRQLQAPAIDLSGMSCAP-ELYAVEALKNAA 153 G+ V P +P + +S+ A ++ A G P + E L A Sbjct: 89 GQSGQHAVFVPPEPV--IDSAWLLSEMFADERVPIKA----GCGWLPGKWLNDEGLHQAE 142 Query: 154 IRALREQPSLLTSPMPINGNVTFRQVVARRALNAGIRIGADDVVVTHGCIEALNLALRAV 213 R +R + G RQ++ + + + +G + V+ THG +AL+L +R + Sbjct: 143 RRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQALDLVIRTM 202 Query: 214 AQAGDTIAVESPTYFGLLQTLESLGMRALEIPKRXPTSPQTGISIEALELAIQTYGNIKA 273 Q GDT+ ++ P Y L+ L G+ + +P R P G+ + LE +T+ + K Sbjct: 203 TQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVP-RTP----GGVDTDVLETLARTH-HPKM 256 Query: 274 VVVVPTLQNPLGCIMPDSHKERLVALCERCAVPLIEDDAYSELADGDVAPSAAKVWDRSG 333 LQNP G + R++ ER ++EDD + EL G D Sbjct: 257 FFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQATDPMLAALDGLQ 314 Query: 334 NVIYCASLNKVLAPGMRLGWMTSGKWHER-VKMLKFAYTRANEEWTQITAANYMGSPAYD 392 VIY S +K +AP +R+G++ + R + K T N E + N + + Sbjct: 315 RVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHR 374 Query: 393 RHLRRLRGNLKEQREQMAEAIA--GYFPSETRLSVPDGGVGLWVELPR-GLSSKAVFAAA 449 RH++ L L + + ++ G P + GG+ W + LS++ + A Sbjct: 375 RHVQTLNATLLSAQATLNAKLSEVGLTP----FTAARGGMFSWATIEGCELSAREIADRA 430 Query: 450 LDQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKL 491 +GI ++PG F S R G EL LR L Sbjct: 431 RQKGIWLAPGDFFHLSAPHQTSFRFNVGYADVPELFDFLRGL 472 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 116/452 (25%), Positives = 203/452 (44%), Gaps = 27/452 (5%) Query: 17 PAPALPIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWL 76 PAP P+ R++ + AI + TL G ++PS RDL + S +T L G+L Sbjct: 39 PAPRTPVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGSSRNTVTYAYEQLLAEGYL 98 Query: 77 EARPRSGYFVRQPRRAAI-------RPVGEPNVLAPLDPAQYVGIHEQVSDFIARRQLQA 129 E+RP +G FV I P+ +P+ + L A+ + Q + RQ A Sbjct: 99 ESRPGAGTFVADTAPDQIPEAVERPEPLTDPSGKSELS-ARGAMLTRQAG--VGERQWGA 155 Query: 130 PAIDLSGMSCAPELYAVEA-LKNAAIRALREQPSLLTSPMPINGNVTFRQVVARRALNA- 187 + ++C P Y + L+N R R LLT P G R+ +A A Sbjct: 156 FMPGVPDVTCVP--YKIWGRLQNKHWR--RSNADLLTYG-PGAGYAGLREQIAEYLRVAR 210 Query: 188 GIRIGADDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPKR 247 + V++T G ++L++ ++ + + GD+ VE P Y+G L SLG++++ I Sbjct: 211 SVNCTPSQVLITTGIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIQSVPI--- 267 Query: 248 XPTSPQTGISIEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDSHKERLVALCERCAVPL 307 Q G+ + L + + P+ Q PLG +M S + L+ V + Sbjct: 268 --AVDQEGMRMRLANLRRPP----RFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWI 321 Query: 308 IEDDAYSELADGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLK 367 IEDD SE G ++ + D V+Y + +K++ PG+R+G++ + R Sbjct: 322 IEDDYDSEFRYGGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTG 381 Query: 368 FA-YTRANEEWTQITAANYMGSPAYDRHLRRLRGNLKEQREQMAEAIAGYFPSETRLSVP 426 A R + + Q T A++M + H+R++R E+ + + ++I +F + ++ Sbjct: 382 IAELYRNGQVFLQATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGG 441 Query: 427 DGGVGLWVELPRGLSSKAVFAAALDQGIGVSP 458 + G+ L + LP+ + AL GI V P Sbjct: 442 EAGLHLVLGLPQECDDVLICEQALAAGIVVRP 473 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,570,234 Number of extensions: 69245 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 10 Length of query: 502 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 413 Effective length of database: 1,198,455 Effective search space: 494961915 Effective search space used: 494961915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)