BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0017.p
         (566 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase [Herba...  1124   0.0  
gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase [Herbasp...    56   7e-09

>gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 635

 Score = 1124 bits (2907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/566 (93%), Positives = 549/566 (96%)

Query: 1   VIRHSTAHLLAYAVKELFPDAQVTIGPVIDNGFYYDFAYKRPFTPEDLAAIEKKMAELAK 60
           VIRHSTAHLLAYAVKELFP+AQVTIGPVIDNGFYYDF+YKRPFTPEDL AIEKKMAELAK
Sbjct: 70  VIRHSTAHLLAYAVKELFPEAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAIEKKMAELAK 129

Query: 61  KDEPVTRKVLPRDEAVAYFKSIGEAYKAEIIESIPQDQDVSLYTEGGFTDLCRGPHVPST 120
           KDEPVTRKVLPRDEAVAYFKSIGE YKAEII SIPQ++DVSLYTEG FTDLCRGPHVPST
Sbjct: 130 KDEPVTRKVLPRDEAVAYFKSIGEDYKAEIIASIPQNEDVSLYTEGSFTDLCRGPHVPST 189

Query: 121 GKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQESYLHMLEEAEKRDHRKLGRA 180
           GKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQE+YLHMLEEAEKRDHRKLGRA
Sbjct: 190 GKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQEAYLHMLEEAEKRDHRKLGRA 249

Query: 181 LDFFHFQDEAPGLIFWHPKGWSIWQQVEQYMRRVYQDSGYQEVKAPQILDRSLWEKTGHW 240
           LD FHFQDEAPGLIFWHPKGW+IWQQVEQYMRRVYQD+GYQEVKAPQILDRSLWEKTGHW
Sbjct: 250 LDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQDNGYQEVKAPQILDRSLWEKTGHW 309

Query: 241 ENYRENMFTTESENRAYALKPMNCPGHIQIYNSGLHSYRDLPLRYGEFGQCHRNEPSGAL 300
           ENYRENMFTTESENRAYALKPMNCPGHIQI+NSGLHSYRDLPLRYGEFGQCHRNEPSGAL
Sbjct: 310 ENYRENMFTTESENRAYALKPMNCPGHIQIFNSGLHSYRDLPLRYGEFGQCHRNEPSGAL 369

Query: 301 HGMMRVRGFTQDDGHIFCTEDQIQDEVAAFNKVVREVYDNFGFTDVAVKLALRPEKRIGE 360
           HGMMRVRGFTQDDGHIFCTEDQIQ+EVAAFN+VVREVYD FGF +VAVKLALRPEKRIG 
Sbjct: 370 HGMMRVRGFTQDDGHIFCTEDQIQEEVAAFNRVVREVYDCFGFKEVAVKLALRPEKRIGA 429

Query: 361 EAVWDKAENALREAIRASGTEWEELPGEGAFYGPKIEYHLKDSIGRSWQCGTMQVDFSMP 420
           E VWDKAENALREAIRASG+EWEELPGEGAFYGPKIEYHLKDSIGRSWQCGTMQVDFSMP
Sbjct: 430 EEVWDKAENALREAIRASGSEWEELPGEGAFYGPKIEYHLKDSIGRSWQCGTMQVDFSMP 489

Query: 421 ARLGAEYVTEDNDRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPEQVVILNISDA 480
           ARLGAEYVTEDN+RKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAP QVVILNISDA
Sbjct: 490 ARLGAEYVTEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPTQVVILNISDA 549

Query: 481 QAEYVKNVAQTLKKQGFRVVTDLRNEKITYKIRQHSLQKPPYILVVGDKERDTNTVAVRA 540
           QA+YV+NVAQTLKKQGFRV TDLRNEKITYKIRQHS+QKPPYILVVGDKERD NTVAVRA
Sbjct: 550 QADYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKERDANTVAVRA 609

Query: 541 RGNVDLGVMPIDVLVERLRTEVETKA 566
           RGNVDLGVM ID LVERL+ EV  KA
Sbjct: 610 RGNVDLGVMSIDTLVERLKDEVAAKA 635


>gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 575

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 192 GLIFWHPKGWSIWQQVEQYMRRVYQDSGYQEVKAPQILDRSLWEKTGHWENY-RENMFTT 250
           G+  + P G  + ++VE  +R     +G  E+  P +    LW++TG W     E M   
Sbjct: 38  GIYTYMPMGLRVIRKVEAIVREEMNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVK 97

Query: 251 ESENRAYALKPMNCPGHIQIYNSGLHSYRDLPLRYGEFGQCHRNEPSGALHGMMRVRGFT 310
           +   R +A++P +      +  S L SY+ LP+ +       R+E      G+MR R FT
Sbjct: 98  DRHGRDFAIQPTSEEVVTDVARSELRSYKQLPVNFYHIQTKFRDERRPRF-GLMRGREFT 156

Query: 311 QDDGHIFCTE-DQIQDEVAAFNKVVREVYDNFGF 343
             D + F  + D ++    A       ++  FG 
Sbjct: 157 MKDAYSFDRDVDGLKKSYQAMYDAYVRIFTRFGL 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,844,518
Number of extensions: 79910
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 2
Length of query: 566
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,193,720
Effective search space: 568210720
Effective search space used: 568210720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)