BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0014.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311298|ref|YP_003775390.1| phenylalanyl-tRNA synthetase su...   256   6e-70

>gi|300311298|ref|YP_003775390.1| phenylalanyl-tRNA synthetase
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  256 bits (655), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 123/130 (94%), Positives = 126/130 (96%), Gaps = 1/130 (0%)

Query: 1   MQDTFYIEGNDTQGKPLLLRTHTSPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFH 60
           MQDTFYIEGND+QGKPLLLRTHTSPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFH
Sbjct: 188 MQDTFYIEGNDSQGKPLLLRTHTSPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFH 247

Query: 61  QVEGLWIAEDISFADLKGVYLNFVKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPL 120
           QVEGLWIAEDISFADLKGVYLNFVKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPL
Sbjct: 248 QVEGLWIAEDISFADLKGVYLNFVKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPL 307

Query: 121 KGXF-SCSGS 129
           KG +   SG+
Sbjct: 308 KGRWLEVSGA 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 644,607
Number of extensions: 26871
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)