BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0012.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase be...   382   e-107

>gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase beta
           chain protein [Herbaspirillum seropedicae SmR1]
          Length = 808

 Score =  382 bits (980), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/246 (73%), Positives = 212/246 (86%)

Query: 183 KVIGVAXVDSAWEADFAGNQAPIKLLNPIASQMNVMRSSLIASLVANVRYNINRKANRVR 242
           +V+  + V+SAWEADFAGN  PIKLLNPIASQM+VMRSSLIA LVAN RYN+NRKA R+R
Sbjct: 515 EVVNFSFVESAWEADFAGNTDPIKLLNPIASQMSVMRSSLIAGLVANARYNVNRKAARIR 574

Query: 243 VFEIGAVFHRDAQVQDGPLEVAGYRQPKRVAGLAYGPVADEQWGQDARNVDFFDVKADLE 302
           VFE+GAVF ++A V DGPL VAG+ QPKRVA LAYGPVA+EQWGQ +RNVD+FDVKADLE
Sbjct: 575 VFEVGAVFSKNAAVADGPLAVAGFDQPKRVAALAYGPVAEEQWGQASRNVDYFDVKADLE 634

Query: 303 ALFAPRALRFARVDHPSLHPGRSAQVMLDGKDIGLIGELHPRLQQKYDLPLAPVVFEVDA 362
           ALFAPR LRF + +HP+LHPGR+AQV+L  + IG+IGELHP+ QQKYDLPLAPVVFEVDA
Sbjct: 635 ALFAPRTLRFVKSEHPALHPGRTAQVLLGEQVIGVIGELHPKWQQKYDLPLAPVVFEVDA 694

Query: 363 AALQQRDVPAYVEISKFPAVTRDLALVVKQAVQVQELRDIFAAEQQDNAVCRIIQAFVLF 422
            ALQQRD+P Y EISKFPAV+RD+ALVVKQ+V  Q+L D+FAAE+Q N  C+I+QA VLF
Sbjct: 695 DALQQRDLPTYAEISKFPAVSRDIALVVKQSVGAQQLMDVFAAEKQANPACQILQALVLF 754

Query: 423 DEYXKR 428
           DEY  R
Sbjct: 755 DEYQGR 760



 Score =  360 bits (923), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/191 (89%), Positives = 181/191 (94%)

Query: 1   MKQRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWGKKGEQIKLLNGN 60
           MKQRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWG+KGE +KLLNGN
Sbjct: 239 MKQRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWGRKGESLKLLNGN 298

Query: 61  TVEVDEWVGVIADDKELESLAGIMGGDATSVSLDTTNIYLEAAFWFPQAIQGRARRYNFS 120
           TVEVDEWVGVI+DDKELESLAGIMGGDAT+VSLDTTNIYLEAAFWFPQAIQGRARRYNFS
Sbjct: 299 TVEVDEWVGVISDDKELESLAGIMGGDATAVSLDTTNIYLEAAFWFPQAIQGRARRYNFS 358

Query: 121 TDAAHRFERGVDFATVVEHIERITALLVEICGMPDTKVAAVDDQIVNLPKREPVKVRTAR 180
           TDAAHRFERGVDFATVV+HIERITALL+EICG  +T+V  VDDQIVNLPKR PV++RTAR
Sbjct: 359 TDAAHRFERGVDFATVVDHIERITALLLEICGTAETRVGPVDDQIVNLPKRAPVQLRTAR 418

Query: 181 ATKVIGVAXVD 191
           A KVIGV   D
Sbjct: 419 AAKVIGVEITD 429


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,250,468
Number of extensions: 49581
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)