BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0011.p
         (92 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311300|ref|YP_003775392.1| integration host factor alpha-s...   179   4e-47
gi|300312982|ref|YP_003777074.1| integration host factor subunit...    64   2e-12
gi|300309668|ref|YP_003773760.1| HU histone family DNA-binding p...    60   4e-11

>gi|300311300|ref|YP_003775392.1| integration host factor
           alpha-subunit [Herbaspirillum seropedicae SmR1]
          Length = 104

 Score =  179 bits (454), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/92 (93%), Positives = 90/92 (97%)

Query: 1   LFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEI 60
           LFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEI
Sbjct: 13  LFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEI 72

Query: 61  PITARRVVTFHASQKLKEMVEVSSGQPLALAV 92
           PITARRVVTFHASQKLKEMVE+SSG P+ ++V
Sbjct: 73  PITARRVVTFHASQKLKEMVELSSGSPVEMSV 104


>gi|300312982|ref|YP_003777074.1| integration host factor subunit
          beta [Herbaspirillum seropedicae SmR1]
          Length = 101

 Score = 64.3 bits (155), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 52/82 (63%)

Query: 7  LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARR 66
          L  ++A   V+T  D + +AL  G+ +++ GFG+F L  +P R GRNPK+G+++ +  +R
Sbjct: 17 LVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRIGRNPKSGDKVMVPEKR 76

Query: 67 VVTFHASQKLKEMVEVSSGQPL 88
          V  F   ++L+E V+   GQP+
Sbjct: 77 VPHFKPGKELRERVDAMVGQPI 98


>gi|300309668|ref|YP_003773760.1| HU histone family DNA-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 115

 Score = 59.7 bits (143), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query: 7   LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARR 66
           ++K  A+  +++  + I  A+ +G+ V+L GFG+F    +  R GRNP+TGEEI I A  
Sbjct: 37  ISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTGRNPQTGEEIKIAAAT 96

Query: 67  VVTFHASQKLKEMV 80
            V F A +  KE V
Sbjct: 97  TVKFSAGKAFKEAV 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 272,765
Number of extensions: 9752
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 1,619,870
Length adjustment: 62
Effective length of query: 30
Effective length of database: 1,326,300
Effective search space: 39789000
Effective search space used: 39789000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)