BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0007.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in...   154   9e-39

>gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in
           lipopolysaccharide synthesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 441

 Score =  154 bits (390), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 158/279 (56%), Gaps = 4/279 (1%)

Query: 86  WIGTFFVVVLALYLTKTGTEFSRVVMTLWLVVTPFTLTLTSLGCRWWALRMYTAKGERRT 145
           W+    V+ L  Y+ +   +F+  V+  W++ TP  L L S   +   +R    KGE   
Sbjct: 61  WLAVVAVLGLIGYVCEFYQQFAPGVLAAWVIGTPVGL-LVSQYAQSRVMRDLHTKGEVSK 119

Query: 146 AIFVGFSEDAQRLAESFQTSKMLGITPMGFFDNRQ-GTQRVGSELPRLGSLMEAIEWIER 204
           AI +G +  A +LAE       L I  MGFFD+R+ G Q  G+  P +G + +   ++ +
Sbjct: 120 AIIIGVNPAALKLAERMDNYPALMIKLMGFFDDREIGRQPQGTFTPLMGKMSDVAAYVRK 179

Query: 205 NPVDVVFVGLVHARTSDIAPVVDALHDSVASVYFVPDSKLFGLGHMQYAEMAGTPVLVAY 264
           + +++V++ +  +    +  ++D L D+ AS+YFVPD  +F L   ++  + G  V+   
Sbjct: 180 HNINMVYISMPISAQPRVLQMIDELQDTTASIYFVPDIYIFNLIQARFDYVGGMAVMAIC 239

Query: 265 ETPFIGITRLLKRFVDVIMSFLILLLLSPALLAIAIGVKLSSPGPVVFRQMRYGVGGQKI 324
           ETPF G+   +KR  D++++ +ILL+L P L+ IAI VK +SPGPV+F+Q RYG+ G++I
Sbjct: 240 ETPFTGMNNFVKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEI 299

Query: 325 VVSKFRSMRNDPLPRTGEIKQATVGDARXPQKKSFCARC 363
           VV KFRSM    L     ++QAT GDAR  +   F  + 
Sbjct: 300 VVYKFRSM--TVLEDGANVQQATKGDARLTKIGGFLRKS 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,067,837
Number of extensions: 40997
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)