BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0003.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311313|ref|YP_003775405.1| acyltransferase [Herbaspirillum...    64   8e-12

>gi|300311313|ref|YP_003775405.1| acyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 350

 Score = 63.9 bits (154), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 4/127 (3%)

Query: 21  GSSDYIYMATDTRIDSILYGAWLA-LILANDTQKHWRRFSSSHVVQAVCLLLLLVCFTLR 79
            S D  Y ATDTRIDSIL+G  LA L L         + +       + +LLLL+   +R
Sbjct: 188 ASMDRTYYATDTRIDSILFGCILATLKLPPAVYAALHKPAVRVGGVTLGVLLLLLSLAVR 247

Query: 80  HPGFRDTLRYSLQGLALMPLVTAICFTDKLAPLTRLLESKPARRVGNWSYSLYLYHPIAI 139
              FR+TLRYS+QGLALMPL           P  RLL  +  +R+G +SYS+YL H   I
Sbjct: 248 DEVFRETLRYSVQGLALMPLFFYSVAHPHSFPF-RLLNLRWVQRIGIYSYSIYLSH--EI 304

Query: 140 VIAEICW 146
           +++ + W
Sbjct: 305 LLSNVDW 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 585,647
Number of extensions: 19941
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)