BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0181.0005.p
         (787 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311893|ref|YP_003775985.1| ATP-dependent protease LA prote...  1484   0.0  

>gi|300311893|ref|YP_003775985.1| ATP-dependent protease LA protein
           [Herbaspirillum seropedicae SmR1]
          Length = 802

 Score = 1484 bits (3843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 751/789 (95%), Positives = 773/789 (97%), Gaps = 3/789 (0%)

Query: 1   LPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAAKDEPSADDIYEIGC 60
           LPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAAKDEPSA+DIYEIGC
Sbjct: 15  LPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAAKDEPSAEDIYEIGC 74

Query: 61  VANILQMLKLPDGTVKVLVEGAQRARIHHISELDTHFVADLTPVESELGDEAEVEAMRRT 120
           VANILQMLKLPDGTVKVLVEGAQRARIHHISELDTHFVADLTPVESE GD+AEVEAMRRT
Sbjct: 75  VANILQMLKLPDGTVKVLVEGAQRARIHHISELDTHFVADLTPVESEQGDDAEVEAMRRT 134

Query: 121 IVQQFDQYVKLNKKIPPEILSSLAGIDDAGRLADTIAAHLPLKLEQKQVILEIFNVAKRH 180
           IVQQFDQYVKLNKKIPPEIL+SLAGIDDAGRLADTIAAHLPLKLEQKQVILEIFNVAKR+
Sbjct: 135 IVQQFDQYVKLNKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQKQVILEIFNVAKRY 194

Query: 181 EHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEDGADLEEL 240
           EHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEDGADLEEL
Sbjct: 195 EHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEDGADLEEL 254

Query: 241 EKKILSAKMPKDALEKAQSELRKLKLMSPMSAEATVVRNYIDTLVGLPWKKKSKVNNDLP 300
           EKKI +AKMPK+ALEKAQSEL+KLKLMSPMSAEATVVRNYIDTLV LPWKKKSKVNNDL 
Sbjct: 255 EKKIAAAKMPKEALEKAQSELKKLKLMSPMSAEATVVRNYIDTLVALPWKKKSKVNNDLT 314

Query: 301 NAEKVLEGDHYGLDKVKERILEYLAVQQRVDKLKAPILCFVGPPGVGKTSLGQSIARATN 360
           NAEKVLEGDHYGL+KVKERILEYLAVQQRVDKLKAPILCFVGPPGVGKTSLGQSIARATN
Sbjct: 315 NAEKVLEGDHYGLEKVKERILEYLAVQQRVDKLKAPILCFVGPPGVGKTSLGQSIARATN 374

Query: 361 RKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLAKVGVRNPLFLLDEIDKLGMDFRG 420
           RKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSL+KVGVRNPLFLLDEIDKLGMDFRG
Sbjct: 375 RKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLSKVGVRNPLFLLDEIDKLGMDFRG 434

Query: 421 DPSSALLEVLDPEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPALLDRMEVIRLSGYT 480
           DPSSALLEVLDPEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPALLDRMEVIRLSGYT
Sbjct: 435 DPSSALLEVLDPEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPALLDRMEVIRLSGYT 494

Query: 481 EDEKTSIAQRYLLPKQIKNNGLKEGEISVAESALRDIIRYYTREAGVRSLEREVSKICRK 540
           EDEKTSIAQRYLLPKQIKNNGLKEGEISVAESA+RDIIRYYTREAGVRSLEREVSKICRK
Sbjct: 495 EDEKTSIAQRYLLPKQIKNNGLKEGEISVAESAIRDIIRYYTREAGVRSLEREVSKICRK 554

Query: 541 VVKMLLLKKQEKKVTVTSRNLDKFLGVRRFDFGIAEKENQVGQVVGLAWTEVGGDLLTIE 600
           VVK+LLLKKQEKKVTVTSRNLDKFLGVRRFDFGIAEKENQ+GQVVGLAWTEVGGDLLTIE
Sbjct: 555 VVKLLLLKKQEKKVTVTSRNLDKFLGVRRFDFGIAEKENQIGQVVGLAWTEVGGDLLTIE 614

Query: 601 AVTMPGKGGVIRTGTLGDVMKESIEAARTVVRSRANKLGIKSEVFEKRDIHIHVPEGATP 660
           AV MPGKG +IRTGTLGDVMKESIEAARTVVRSRA KLGIK+EVFEK DIHIHVPEGATP
Sbjct: 615 AVNMPGKGQIIRTGTLGDVMKESIEAARTVVRSRARKLGIKNEVFEKSDIHIHVPEGATP 674

Query: 661 KDGPSAGIAMTTAMVSVFTGIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTV 720
           KDGPSAGIAMTTA+VS+F+GIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTV
Sbjct: 675 KDGPSAGIAMTTALVSIFSGIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTV 734

Query: 721 LIPEQNVKDLTEIPDNVKNKLEIVPVRWIDKVLEIALESQPVALTEEEAAV-VAVAPKE- 778
           LIPEQNVKDL EIPDNVKNKLEI+PVRWIDKVLE+ALE QPV L+E+EA V  AVAPKE 
Sbjct: 735 LIPEQNVKDLAEIPDNVKNKLEIIPVRWIDKVLEVALERQPVPLSEDEAIVEAAVAPKEG 794

Query: 779 STDPSVVKH 787
           +TDP VVKH
Sbjct: 795 ATDP-VVKH 802


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,143,076
Number of extensions: 86050
Number of successful extensions: 370
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 1
Length of query: 787
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 694
Effective length of database: 1,179,515
Effective search space: 818583410
Effective search space used: 818583410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)