BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0181.0004.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-bind...   571   e-164
gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU AT...    89   4e-19

>gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-binding
           specificity subunit [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score =  571 bits (1471), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/298 (93%), Positives = 292/298 (97%)

Query: 1   LLDQYVIGQSTAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGKTLLAQTL 60
           LLDQYVIGQ+TAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGKTLLAQTL
Sbjct: 74  LLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGKTLLAQTL 133

Query: 61  ARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRK 120
           ARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQ+GIVYIDEIDKISRK
Sbjct: 134 ARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQKGIVYIDEIDKISRK 193

Query: 121 SDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQIDTTNIMFICGGAFD 180
           SDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQIDTTNIMFICGGAFD
Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQIDTTNIMFICGGAFD 253

Query: 181 GLTKIISERSEKSGIGFGANVKSQTQKTASEVLLHAEPDDLVKFGLIPELVGRLPVIAAL 240
           GL +IIS+RSEKSGIGF A+VKSQTQK+ SEVLL+AEP+DLVKFGLIPELVGRLPVIA L
Sbjct: 254 GLARIISDRSEKSGIGFSASVKSQTQKSNSEVLLNAEPEDLVKFGLIPELVGRLPVIATL 313

Query: 241 NELNEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKKALARKTGARGF 298
           NEL+E+ALIQIL+EPKNALIKQY+KLLQMEGAELEIRPAA+ AIAKKALARKTGARG 
Sbjct: 314 NELDEDALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAKKALARKTGARGL 371


>gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU
           ATPase subunit [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 66/99 (66%), Gaps = 13/99 (13%)

Query: 2   LDQYVIGQSTAKRILSVAVYNHYKR------LKHLGKKDDVELAKSNILLVGPTGSGKTL 55
           LD++V+GQ+ AKR +S+A+ N ++R      L+H       E+   NIL++GPTG GKT 
Sbjct: 12  LDKHVVGQARAKRAVSIALRNRWRRQQIEEPLRH-------EITPKNILMIGPTGVGKTE 64

Query: 56  LAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 94
           +A+ LA++ + PF+  +AT  TE GYVG DV+ II+ L+
Sbjct: 65  IARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLV 103


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 826,606
Number of extensions: 32456
Number of successful extensions: 242
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)