BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0181.0001.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311896|ref|YP_003775988.1| peptidyl-prolyl cis/trans isome...   727   0.0  

>gi|300311896|ref|YP_003775988.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/399 (88%), Positives = 378/399 (94%), Gaps = 1/399 (0%)

Query: 1   MKMVAAQFGYQVETEVLNDKVGRAFNDVAVENNLRVAGYPKIEPKTSEGVAEGSLAFDAT 60
           MKMVAAQFGYQVETEVLNDKVGRAFND AVENNLRVAG+P+IEPKTSE   EG LAFDAT
Sbjct: 51  MKMVAAQFGYQVETEVLNDKVGRAFNDAAVENNLRVAGFPRIEPKTSEEAGEGKLAFDAT 110

Query: 61  FEIYPEVVLGDLSTAEVEKTTSAVSDTEIDKTLDILRKQRVHYHVKGEQGAHGDGG-EPV 119
           FE+YPEV LGDLS AEVEKTT++VSD EIDKT+DILRKQRVHYHVKGEQGAHGDGG +  
Sbjct: 111 FEVYPEVTLGDLSGAEVEKTTASVSDAEIDKTIDILRKQRVHYHVKGEQGAHGDGGADQS 170

Query: 120 AQNGDRATVDFVGKIDGVEFQGGKADAFPFVLGEGRMLPEFEAATLGLKVGESKTFPLAF 179
           AQNGDR TVDFVGKIDGVEFQGGKA+AFPFVLGEGRMLPEFEAAT+GLKVGESKTFPLAF
Sbjct: 171 AQNGDRVTVDFVGKIDGVEFQGGKAEAFPFVLGEGRMLPEFEAATIGLKVGESKTFPLAF 230

Query: 180 PADYHGKDVAGKTAEFTITLKQLEWAHLPEVDAEFAKSLGIEDGDLTKMREDIKRNLERE 239
           P DYHGKDVAGKTAEFTIT+K++EWAH+PEVDA FA+SLGIEDGDLTKMREDIK+NLERE
Sbjct: 231 PEDYHGKDVAGKTAEFTITVKKIEWAHMPEVDAVFAQSLGIEDGDLTKMREDIKKNLERE 290

Query: 240 VSARTKAKTKDSVMDALIKVSELEVPKALVEQDIERLIEMAHQDMAQRGMDPKGMQLPRE 299
           V+ARTKAKTKDSVM+ALIK SELEVPKAL++QD+ERL EMA QDMAQRGMDPKGMQLP+E
Sbjct: 291 VTARTKAKTKDSVMNALIKASELEVPKALIDQDVERLAEMARQDMAQRGMDPKGMQLPKE 350

Query: 300 LFTAQAERRVRLGLILAEVVKTNKLEATEEQVKAQVEDFAQSYEDPQQVLKYYFSDRRRL 359
           LFTAQAERRVRLGLILAEVVK NKLEATEEQVKAQ+EDFAQSYEDPQQVLKYYFSDRRRL
Sbjct: 351 LFTAQAERRVRLGLILAEVVKQNKLEATEEQVKAQIEDFAQSYEDPQQVLKYYFSDRRRL 410

Query: 360 AEVEALVLEENVVNYVLGKSKVSEKSVAFDALMGNQPQA 398
           AEVEALVLEENVVNYVLGK+KVSEK V+FD LMGNQ QA
Sbjct: 411 AEVEALVLEENVVNYVLGKAKVSEKPVSFDELMGNQAQA 449


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,117,174
Number of extensions: 45908
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)