BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0039.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312365|ref|YP_003776457.1| transcription regulator protein...   217   3e-58
gi|300311177|ref|YP_003775269.1| transcription regulator protein...   145   1e-36

>gi|300312365|ref|YP_003776457.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  217 bits (553), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 126/145 (86%), Gaps = 1/145 (0%)

Query: 13  IDQALMLENQLCFAMYSASLAMTKVYKKILKDLDITYPQYLVMLVLWEKDEVTVSDLGGK 72
           IDQAL+L++QLCFAMYSASLAMTK YKK+L  LDITYPQYLVM+VLWEKD+VTVS+LGG+
Sbjct: 14  IDQALLLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGR 73

Query: 73  LFLDSGTLTPLLKRMEAMGLLHRARDTEDERRVVVRLSQDGRALRKRATAVPERLMCALP 132
           LFLDSGTLTPLLKRMEAMGLLHR RD EDERRV+V L+  GRALR++A  VP ++ C LP
Sbjct: 74  LFLDSGTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVPLQMSCMLP 133

Query: 133 PLEQVASLREQLKDLRKGLLEDAED 157
            L+QV +L  +LK +RKG L+DAED
Sbjct: 134 SLDQVKNLVVELKQVRKG-LQDAED 157


>gi|300311177|ref|YP_003775269.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score =  145 bits (367), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 107/143 (74%), Gaps = 1/143 (0%)

Query: 16  ALMLENQLCFAMYSASLAMTKVYKKILKDLDITYPQYLVMLVLWEKDEVTVSDLGGKLFL 75
           A +L+ QLCFA+YS SL+M+K+Y+K+L+DL ITY QYLV++VLWE+D++TVS++G +L L
Sbjct: 11  APLLDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLVL 70

Query: 76  DSGTLTPLLKRMEAMGLLHRARDTEDERRVVVRLSQDGRALRKRATAVPERLMCALPPL- 134
           DS TLTPLLKRMEA GL+ R R   DER+VV+ L+ +G  LR++A  +P  ++ A     
Sbjct: 71  DSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATESTA 130

Query: 135 EQVASLREQLKDLRKGLLEDAED 157
            ++A+++E+L  LR  L ++  D
Sbjct: 131 AELAAIKEELMQLRARLHKNTGD 153


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 407,080
Number of extensions: 13962
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)