BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0038.p
         (135 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312363|ref|YP_003776455.1| hypothetical protein Hsero_3059...    71   3e-14

>gi|300312363|ref|YP_003776455.1| hypothetical protein Hsero_3059
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 71.2 bits (173), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 10/128 (7%)

Query: 10  ALSDEQXFSDAFSIALSDEQARQSAAQLAELMFRRKPSWISLLLSIRNRAVAMFGLRAAD 69
           AL     F+D+F I L+ E A     ++A  M   +P WIS L+ +R+  VA  GL+ A 
Sbjct: 20  ALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLLVAPLGLKRAG 79

Query: 70  MQIDDGVRRAVGGFPMISQSDDLVQLGFDDKHLDFRVWVRRDAA----TPTSPAQLTLTT 125
              D G   A  GFP++      V +G DD HLDFR+ V +  A        P  LT+TT
Sbjct: 80  ---DHG---APAGFPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGREGSAGPGWLTVTT 133

Query: 126 VVNXIKLL 133
           VV   +LL
Sbjct: 134 VVRTKRLL 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 365,913
Number of extensions: 12540
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,260,010
Effective search space: 74340590
Effective search space used: 74340590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)