BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0036.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312362|ref|YP_003776454.1| cytochrome bd-type quinol oxida...   344   3e-96

>gi|300312362|ref|YP_003776454.1| cytochrome bd-type quinol oxidase
           subunit 2 [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  344 bits (883), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 172/251 (68%), Positives = 204/251 (81%), Gaps = 1/251 (0%)

Query: 1   VPPLICGVAFGNLLLGVPFHYDETMRVEYTGSFFELLNPFGLLSGVLSVAMLLTHGATFI 60
           VPPLICGVAFGNLLLGVPFHYD+TMRVEYTGSFF LLNPFGLL+G+LSVAMLL HGA F 
Sbjct: 130 VPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAMLLMHGAAFA 189

Query: 61  MVKTEAVIAARARKIALWGALATLALFVAAGFWVAHGIDGYSITDMPSANSAFMPLAKTV 120
            VKTEA +A R+RK  +  AL T+ LF+A GFWVA  + GY I  MP ANSAF PLAKTV
Sbjct: 190 FVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSAFTPLAKTV 248

Query: 121 EIVSGAWMDNYARWPETKAIPITAIAGLLLVLVFGAWRKARLAFISSGIAVAGIILTAAT 180
           E+V+GAW DNYA+WP TK  P   +AG +L  +    R ARLAFI+S ++V GIILTA  
Sbjct: 249 EVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVTGIILTAGM 308

Query: 181 AMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYRVMRGKVTL 240
           ++FPF+MPSSLD +SSLT+WDSVSSHKTLG+MFW+VL F+PLI++YT WVYRV++GKVT 
Sbjct: 309 SLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRVVKGKVTA 368

Query: 241 KHIADNEHTAY 251
           + I +NEHTAY
Sbjct: 369 RDIHENEHTAY 379


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 804,298
Number of extensions: 32553
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)