BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0035.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxida...   316   2e-87

>gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxidase
           subunit 1 [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  316 bits (809), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/193 (80%), Positives = 168/193 (87%)

Query: 170 RAEFDKLKHDLGYGLLLKKYTPNVIDATPQQIANAVDDTIPNVAPLFWSFRGMVALGMLF 229
           RAEFDKLK DLGYGLLLKKYT  V+DATP+QI+ AV+DTIP VAPLFWSFRGMVALG LF
Sbjct: 344 RAEFDKLKKDLGYGLLLKKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLF 403

Query: 230 LFIFSAAFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWIVAEYGRQPWTIAGILPTH 289
           LFIFSA+F+FL +KQLAPQRWLLRLAV SIPLPWIAAELGWIVAEYGRQPWTIAGILPTH
Sbjct: 404 LFIFSASFWFLAKKQLAPQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTH 463

Query: 290 LSASTLQASSLYFSLAGFILFYTFLLVVEMMLMVKYAKRGPSSLHTGKYHWELLEKEKKP 349
           LSAS+LQ  SLYFSLAGFILFYTFLLVVEM+LMVKYA+ GPSSLHTG+Y+WE   KE  P
Sbjct: 464 LSASSLQPGSLYFSLAGFILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESGP 523

Query: 350 AVAAKPPLPKPAR 362
                PPL   A 
Sbjct: 524 GDVLPPPLNPSAN 536



 Score =  314 bits (805), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 152/164 (92%), Positives = 160/164 (97%)

Query: 1   MLPIDEVVSLSRLQFAITALYHFLFVPLTLGLSWILVIMESVYVMTGSPIYKDMTRFWGK 60
           M+PIDEVVSLSRLQFA+TALYHFLFVPLTLGLSWILVIMESVYVMTG+ IYKDMTRFWGK
Sbjct: 1   MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60

Query: 61  LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMAAFFLESTFVGLFFFG 120
           LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEG+ AFFLESTFVGLFFFG
Sbjct: 61  LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120

Query: 121 WDRLSRVKHLMVTFLVALGSSLSALWILIANGWMNNPVGAEFNF 164
           WD+LSR +HL+VT LVALGS+LSALWILIANGWMNNPVGAEFNF
Sbjct: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNF 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,090,430
Number of extensions: 46893
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)