BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0031.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [...    75   4e-15

>gi|300312352|ref|YP_003776444.1| TPR repeat containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 570

 Score = 75.1 bits (183), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 95/201 (47%), Gaps = 8/201 (3%)

Query: 10  MNNNDAIAQAYLFFQHGQLEAAHAILQPLAQQVDADFNLLHLAGAVAAGLQLHAQAIGLY 69
           MN  D +  A   F       A A+L  L      D + LHL G+VAA     A+A   +
Sbjct: 1   MNPTDTLKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAW 60

Query: 70  RRALALTPGE----LAVSYKLGRVLYEAGLHQEALSLYLQLIAAGVQHADIFHAAALLLQ 125
           ++AL L P +    LA+ Y+LGR  YE G  ++A  LY +LI +G Q  ++F AAA  LQ
Sbjct: 61  QQALRLLPPDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQ 120

Query: 126 QFN----RHEEALQTLEHLFRLAPQNADAWHLHAISLGRLQRPGEALQSMQKAVALAPAQ 181
             +       +AL  LE   +  P  AD WH  A    R ++   A Q + +A+ L   +
Sbjct: 121 GMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQR 180

Query: 182 TVYRFDLALLQHELHLNEEAL 202
             Y     L++H     EEAL
Sbjct: 181 AQYWLAAGLVEHAQGQFEEAL 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 565,179
Number of extensions: 20856
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)