BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0028.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance ...   185   3e-48
gi|300309362|ref|YP_003773454.1| transmembrane sensory transduct...   113   2e-26
gi|300311800|ref|YP_003775892.1| two component heavy metal senso...    92   5e-20

>gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance two
           component transmembrane sensor histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score =  185 bits (470), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 96/118 (81%)

Query: 6   SWTLAFRVSALFALIAFLVVTGLGMYLYNSARQSLEVRADYTLIGRVEHFRNLLHDLYNV 65
            WTL  RV+ALFAL+  LVVTGLG YL  SA Q+L  RAD  LIGRVEHFRNL+HDLYNV
Sbjct: 10  GWTLTTRVTALFALMTSLVVTGLGFYLDRSAGQALSQRADQALIGRVEHFRNLMHDLYNV 69

Query: 66  EQMEQRPALFESMLGNEQDVRIFRRQGEAPFINMNPDKLTPPEMTPVAIGMPLGIASL 123
           EQMEQRPALFESM+GNEQDVRIFRRQGEAPFI  NPD L PP MTP+ +G P+  ASL
Sbjct: 70  EQMEQRPALFESMMGNEQDVRIFRRQGEAPFIQSNPDHLVPPAMTPLPVGSPVSSASL 127



 Score =  170 bits (431), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 100/122 (81%), Gaps = 2/122 (1%)

Query: 120 IASLSADLAHEIRTPVNILMGQTQVTLGQRRSVEEYEQLLESNLEELTRLSRIIENILFL 179
           +A  S DLAHEIRTP+N+LMGQ+QV LGQRRS EEYEQ+LESN+EEL RLSRI+ENILFL
Sbjct: 251 LAQFSGDLAHEIRTPINVLMGQSQVALGQRRSPEEYEQVLESNVEELQRLSRIVENILFL 310

Query: 180 AQTDHAELMVDRSAIELSEELQKIADYFEGVAAERDMQFEVDVAPGLACSANLVMGRRAV 239
           AQ DHA L V+R+A++L+EEL +I DYFEG+A ER M+F+V  A    C ANL+M RR V
Sbjct: 311 AQADHAALAVERNALDLAEELGRITDYFEGIADERGMRFDVQAAG--QCQANLIMWRRVV 368

Query: 240 SN 241
           SN
Sbjct: 369 SN 370


>gi|300309362|ref|YP_003773454.1| transmembrane sensory transduction
           histidine kinase for cobalt/zinc/ cadmium resistance
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 467

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 88/122 (72%), Gaps = 2/122 (1%)

Query: 120 IASLSADLAHEIRTPVNILMGQTQVTLGQRRSVEEYEQLLESNLEELTRLSRIIENILFL 179
           ++  SADLAH++RTP+N LM QTQV LG+ R ++EY+ LL SN+EE  RLSR++E++LFL
Sbjct: 245 LSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMMESMLFL 304

Query: 180 AQTDHAELMVDRSAIELSEELQKIADYFEGVAAERDMQFEVDVAPGLACSANLVMGRRAV 239
           A+ ++A +++    +++++EL +IADYFEG+A E  ++  V  A  L   A L+  RRAV
Sbjct: 305 ARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLVVQGAGRLQADATLL--RRAV 362

Query: 240 SN 241
            N
Sbjct: 363 GN 364


>gi|300311800|ref|YP_003775892.1| two component heavy metal sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 467

 Score = 92.0 bits (227), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 78/129 (60%)

Query: 120 IASLSADLAHEIRTPVNILMGQTQVTLGQRRSVEEYEQLLESNLEELTRLSRIIENILFL 179
           + + +AD+AHE+RTP+  L+G+TQV L + RS  E++ +L+SNLEEL R+  I+ ++LFL
Sbjct: 245 LEAFNADVAHELRTPLANLIGETQVALARERSAGEFKDVLQSNLEELDRIRSIVNDMLFL 304

Query: 180 AQTDHAELMVDRSAIELSEELQKIADYFEGVAAERDMQFEVDVAPGLACSANLVMGRRAV 239
           A++D  E    R    +++E+QK  D+FE V  +  M+ EV             + +RA+
Sbjct: 305 ARSDQGEAATARVPARVADEVQKTVDFFEFVLDDSGMRIEVAGDTEATAMMETALFKRAL 364

Query: 240 SNXLPCPAQ 248
           +N +    Q
Sbjct: 365 TNLIQNAIQ 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 786,753
Number of extensions: 28738
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 4
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)