BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0024.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312354|ref|YP_003776446.1| sulfite oxidase transmembrane s...   217   8e-58

>gi|300312354|ref|YP_003776446.1| sulfite oxidase transmembrane
           subunit YedZ protein [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  217 bits (552), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 127/151 (84%)

Query: 1   LYFLCITLAVTPLRKLTKWNWLVRLRRMLGLYAFFYVALHFTIFFWLDHFFDVREMWADI 60
           LY  C+TLAVTPLRKLT  NWLVR+RRMLGL AFFY+ LHFT F W DHFFD+ E+W DI
Sbjct: 60  LYLFCLTLAVTPLRKLTGLNWLVRMRRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDI 119

Query: 61  VKRPFITVGVLAFVLLIPLAVTSTNAMVRRLGGKRWQWLHRLTYVIVPLGVLHFWWVKAG 120
           +KRPFITVGV+A +L IPLA+TSTN MVRRLGGKRWQ LHRL Y+IVPLGVLH+WW KAG
Sbjct: 120 LKRPFITVGVIALLLSIPLALTSTNGMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAG 179

Query: 121 KNLLAQPILFSMIVALLLLTRVLSEKXTAEK 151
           KNL+AQP+LF+++V L+L+ R++  K  A +
Sbjct: 180 KNLIAQPLLFAVLVGLMLVLRLVWRKGRAAR 210


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.144    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 875,127
Number of extensions: 36676
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)