BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0016.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311794|ref|YP_003775886.1| TetR family transcription regul...   179   8e-47

>gi|300311794|ref|YP_003775886.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  179 bits (455), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query: 11  AXRAGVGKATIYRWWPNKSSLAMEALLREVGPNVAFPETESARHDIENQIRKLAKLYRGK 70
           A RAGVGKATIYRWWPNKS+LAMEALLR V P     ++ S+R DIE  + +L++L RGK
Sbjct: 81  AARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTDIELHMLQLSQLLRGK 140

Query: 71  TGRVVCEMIGLSQFDAETMRLFNDNFLDPRRNAAKQVLLRGIQNGEFKPDLDFDVIFDLL 130
           +GRVV EMI L+QF+ E+ R+FNDN+L+PRR A   VL RG Q GEF+ D D  ++FDLL
Sbjct: 141 SGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRGEFREDADLSLVFDLL 200

Query: 131 YGPIIQRMLMRHAGIDERHVDLHVALVLDGIT 162
           Y P++QR+L     IDER V   + LVL  IT
Sbjct: 201 YAPLLQRLLTGQGDIDERQVQAQLKLVLGSIT 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 511,394
Number of extensions: 19199
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)