BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0010.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312643|ref|YP_003776735.1| Zn-dependent protease with chap...   319   1e-88

>gi|300312643|ref|YP_003776735.1| Zn-dependent protease with
           chaperone function transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score =  319 bits (818), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/227 (74%), Positives = 191/227 (84%)

Query: 2   CPINQLRVSERLNRAARKVTYPDGAYLEIQDNAAFTSLLHATAHRDSLVVRMQQNWRATL 61
           CPI QLRVSER  RAARKV++PDGAYLEI D AAF  LL  T H+DSLVVR+QQ+WR  L
Sbjct: 37  CPIGQLRVSERFARAARKVSFPDGAYLEIIDGAAFRELLQETGHQDSLVVRLQQSWRHAL 96

Query: 62  AAAATLVAVLVLGYLYLLPLAAEVVARSLPISVEQRIGDGALDFLDDHVLLPTQLPAARR 121
           AA A LVAV+VL Y+YLLPLAA+ +A +LP++V+++IG G L+FLD HVL P+QL A R 
Sbjct: 97  AACAVLVAVVVLSYVYLLPLAAQGIAATLPVAVDRQIGQGTLEFLDQHVLAPSQLDARRT 156

Query: 122 TAITTRFRALTAEVEGVPHYEIVFRKSRIGPNALALPSGQIVLTDEIVTLLDDDDAVMGV 181
            AIT RFRALTA +   P Y+IVFRKSRIGPNA ALPSGQIV+TDEIV LLDDDDA+MGV
Sbjct: 157 QAITARFRALTAPLPDAPDYQIVFRKSRIGPNAFALPSGQIVVTDEIVRLLDDDDALMGV 216

Query: 182 LAHELGHVHRRHLMRRLIQSSAIGAAATALFGDVSAVIANVPTVLLD 228
           LAHELGHVHRRHLMRRLIQSSAI A AT LFGDVSAV+AN+PTVLLD
Sbjct: 217 LAHELGHVHRRHLMRRLIQSSAIAATATVLFGDVSAVLANIPTVLLD 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,911
Number of extensions: 23719
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)