BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0009.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312642|ref|YP_003776734.1| transmembrane protein [Herbaspi...   424   e-120

>gi|300312642|ref|YP_003776734.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 363

 Score =  424 bits (1089), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/337 (67%), Positives = 272/337 (80%), Gaps = 1/337 (0%)

Query: 2   EAFSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAKVRRLRYFYDNTTVAGTSFEYHGNPI 61
           EAFSFSGRG EYFRIWIVNLLLS+VT GIYSAWAKVRRLRYFYDNT+VAG SF+YHGNPI
Sbjct: 28  EAFSFSGRGGEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGGSFDYHGNPI 87

Query: 62  AILKGRIVAVVLLFGYQFAFNYNPLLGMIALLVFALAVPWLIWRSLQFKLYNSSYRGIRF 121
           AILKGRI+AVVLL  Y FA   +PLLG+ A L+  LA PWL+WRSLQFKLYN+SYRGIRF
Sbjct: 88  AILKGRIIAVVLLAVYNFAGAASPLLGLAAALLLVLAGPWLLWRSLQFKLYNTSYRGIRF 147

Query: 122 GFRGNAGGAYKVYLLLPLLTLLTLYLLTPFTHQRIKRFQHNESRFGASHFSFDGSVGSFY 181
           GFRG+ GGA + +L+ P+L  ++L LL P  +QR KR+QH+E+RFGA+HFSF GSVG+FY
Sbjct: 148 GFRGSLGGAARNFLMWPMLASISLGLLAPLAYQRFKRYQHSEARFGATHFSFHGSVGAFY 207

Query: 182 KTYLVGFGIYLAGFIAIVVALGGTALIAAGRQFGAHSVFSFMLLFFALYAWTFLMYPLFL 241
           KT+L+G G++L G I I V  GG  LI      G  +VFS ML+  ALYAWTFL  PL++
Sbjct: 208 KTFLIGLGLWLGGIIVIFVGFGGITLIQMVHA-GTTAVFSLMLMVLALYAWTFLALPLWM 266

Query: 242 TLLQNLIWNHTRLGEHHFRSAMRWPRMMFIAFTNIIGIVVTLGLFTPFAQIRALRYKIES 301
           TLLQNL+WN+TRLGEH F+S MRW R  FI FTN++G+V TLGL+TPFAQIR +RY+IES
Sbjct: 267 TLLQNLVWNNTRLGEHRFQSDMRWGRTAFIVFTNVLGVVFTLGLYTPFAQIRMMRYRIES 326

Query: 302 MSLHAAGNLDEFIADHAAQGSAAGEGMSDLLDFDLSL 338
           ++L  A +LD+F+A   A GSA GEG+ DLLDFDLS+
Sbjct: 327 LTLLPASSLDDFVASSEAHGSATGEGLGDLLDFDLSM 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.145    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,044,386
Number of extensions: 41851
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 131 (55.1 bits)